Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01144 ATGGAGGAAACTTTTGTTCCTCTTCGTGGAATTAAGAATGATCTGAAAGGGAGGTTAATGTGTTACAAACAAGACTGGACTGGTGGTTTGAGAGCTGGATATAGGATTTTGGCTCCCACCACTTACATATTCTTTGCTTCTGCAATTCCTGTCATTTCATTTGGTGAACAGTTGGAGAGAAGTACTGATGGGGTGCTGACTGCAGTTCAAACCTTAGCCTCCACAGCTCTTTGTGGGATCATTCACTCCATTGTTGGAGGTCAACCTTTGCTCATCTTGGGAGTTGCAGAGCCTACTGTTATTATGTACACCTTCATGTTTAATTTTGCGAAGGAACGACCTGAGTTGGGCCGGAATTTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGCTGTTCTTAATGGCTATATTAGGCGCTTGTTCCATCATCAATAGGTTCACACGTCTGGCTGGTGAACTGTTCGGTTTGCTTATCGCAATGCTTTTCATGCAGCAAGCAGTCAAAGGACTTGTGGATGAGTTTCGCATCCCAGAACGGGAAAATCCAAAATCGCTCGAGTTTGTACCTTCTTGGAGGTTTGCCAATGGGATGTTTGCTTTGGTACTATCATTTGGCCTTCTACTCACTGCTTTAAGGAGCCGAAAAGCACGATCGTGGCGATATGGATCAGGTTGGCTCAGAAGCTTGATAGCAGACTATGGAGTGCCGCTCATGGTTCTTGTTTGGACAGGTATTTCTTATATACCTTCAAAAAGTGTCCCACAAGGAATCCCAAGGCGACTCTTCAGCCCCAATCCATGGTCTCCCGGTGCATACGAAAATTGGACTGTTATTAAGGATATGCTTGACATTCCGGTTTTTTATATCTGTGGAGCTTTCATCCCGGCTACGATGATTGCGGTGCTTTACTATTTCGACCATAGTGTTGCATCTCAACTTGCTCAGCAGAAAGAGTTCAATTTGAGGAAACCATCTTCTTACCATTATGATTTACTTCTATTGGGATTCTTGACCTTAATATGTGGTCTTCTTGGAATCCCTCCATCTAATGGAGTCATCCCACAATCTCCAATGCATACAAAGAGCCTGGCTACTCTCAAACACCAGTTGCTGCGGAATAAACTTGTAGAAACGGCACGGAGTAGTATGAGAAAGAATGCTAGCTTAGGACAGTTGTATGGAAGTATGCAACAAGCATATCAACAAATGCAGACCCCCTTGATCTACCAACAGCCTGCAGTTCGTGGACTGAATGAGCTAAAAGAGACAACCATTCAAGCTGCTTCTAGTATGGGCAGTTTCGATGCTCCGGTCGATGAGACAATATTTGATATCGAAAAGGAAATTGATGATCTATTGCCTGTTGAGGTGAAAGAACAGCGGGTCAGTAATTTGCTTCAAGCTACAATGGTGGGAGGATGCGTTGCAGCCATGCCGGTCCTGAAAAAGATCCCGACCTCGGTTCTTTGGGGTTACTTCGCTTTTATGGCCATCGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTGCTCTTTACTGCACCCAGCAGAAGATTCAAAGTTCTTGAGGATTACCATGCGACTTTCGTCGAAACCGTTCCATTCAAATCCATTGTACTTTTTACAATTTTTCAAACAGTATATTTGTTCATATGTTTTGGACTAACATGGGTTCCGATTGCCGGGGTGATGTTTCCTCTGATGATCATGCTCCTCGTCCCTGTAAGACAGTACCTTCTTCCCAAGTTTTTCAAAGGTGCACATCTCCAAGACCTCGATGCTGCCGAATACGAAGAAGCGCCTGCTTTACCGTTCAATCTTGCAACGGAAGCCGAGCTAGGCTCCGGAGCATCTTTCGGTGGGGATGGAGAGATTTTAGATGAGGTTATCACCCGAAGCCGTGGTGAGTTTAGGCGTATTAGCAGTCCTAAAATCACAAGCTCCACGGCAACACCAATATCTGACCGAAAAAGTATAGACAGCCCTCATCGCTCTTTCAGCCCTCGGTTGAGCGAGCTAAGAGGAGAGCACAGTCCTCGAGCCGGTGGACGAGGGACACCAGGTCAGAGGAGTGCAGAAGCTAAACCATCCAGTCTGGGAAAGAGCCCTCTTAATAACACAGCATCAAAGTAG 2154 45.45 MEETFVPLRGIKNDLKGRLMCYKQDWTGGLRAGYRILAPTTYIFFASAIPVISFGEQLERSTDGVLTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRLAGELFGLLIAMLFMQQAVKGLVDEFRIPERENPKSLEFVPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGWLRSLIADYGVPLMVLVWTGISYIPSKSVPQGIPRRLFSPNPWSPGAYENWTVIKDMLDIPVFYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVETARSSMRKNASLGQLYGSMQQAYQQMQTPLIYQQPAVRGLNELKETTIQAASSMGSFDAPVDETIFDIEKEIDDLLPVEVKEQRVSNLLQATMVGGCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRFKVLEDYHATFVETVPFKSIVLFTIFQTVYLFICFGLTWVPIAGVMFPLMIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPALPFNLATEAELGSGASFGGDGEILDEVITRSRGEFRRISSPKITSSTATPISDRKSIDSPHRSFSPRLSELRGEHSPRAGGRGTPGQRSAEAKPSSLGKSPLNNTASK 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21678123 21682529 + Lsi03G011440.1 Lsi03g01144 658894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01144 717 MobiDBLite consensus disorder prediction 698 717 - -
Lsi03g01144 717 Gene3D Helical hairpin bin 18 60 - -
Lsi03g01144 717 Pfam HCO3- transporter family 8 180 IPR011531 GO:0006820|GO:0016021
Lsi03g01144 717 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016021
Lsi03g01144 717 Pfam HCO3- transporter family 460 550 IPR011531 GO:0006820|GO:0016021
Lsi03g01144 717 MobiDBLite consensus disorder prediction 664 686 - -
Lsi03g01144 717 PANTHER ANION EXCHANGE PROTEIN 1 699 IPR003020 GO:0005452|GO:0006820|GO:0016020
Lsi03g01144 717 MobiDBLite consensus disorder prediction 648 663 - -
Lsi03g01144 717 MobiDBLite consensus disorder prediction 648 717 - -
Lsi03g01144 717 PANTHER BORON TRANSPORTER 2-RELATED 1 699 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00374 Lsi-Chr2:3242172 Lsi03g01144 Lsi-Chr3:21678123 0 dispersed
Lsi03g01144 Lsi-Chr3:21678123 Lsi07g00483 Lsi-Chr7:5076049 0 dispersed
Lsi03g01144 Lsi-Chr3:21678123 Lsi08g01171 Lsi-Chr8:20326857 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01144 K24194 - csv:101205388 1394.41