Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01148 ATGGAGGCTGGATATGGAAGCGAAGCTTGTCAATGGTATGGTATGGGTACCATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTGAAATCTGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTGACAAACGGGGGTTCGTTGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATTGAAGATGAGAATCTTAATGATGAAGCGCGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGAGGAAATTCCAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAATGCATTCTAAGGCGAGTAATGCACTTGTTGCAAATGTTCTGCAGCGATTCTGTCAACAATGTAGCAGGTTCCAGGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGTTATTTACTGTTAACACTATCGCGAGTACTTGCAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGAATCTTCTTTCTCATCTTATACGAAGTATTGCCTGCCAATCTAGTGAGCATGGGGGGAAAAACCTATCTGGGATTCCCCAGAATTTGCTGAACAACAGGGCATTACTTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAGGTACCTTTGAGATCTTCTAAACAACATGACACGATACCTATATCTGAGACACCAGTACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTACTAAACCAAGCACTTCAAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGATGGGCAGTGCAAGATGACGGACTTCGATCTGAACGATGCTTATGTTGACTCAGACGATGGCATGGAAGATATTGAGAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCACGTTGTGCGAGCTCAGGTTCTCAATTGGTTATCACACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGGCAGACTGAAGCTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAGAACTGGATGGGTTTACGTGCGGGTTCAGCATCAAATAGCCATTGTTTATCATGGTCAGGTTGTAGTTGACACCGCCTTGCCTCTTAGAAACAAGAATTACCGTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCCACATCTAAGAAGGCTATGTTTTCAGTTAAAGGAATAAACTTGAACCAACCTACAACTAGGTTACTCTGCGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCAGATGAGTCAACAGAAAGTGGTGATATCTTGAAGGCGCAAGATGACAGCCAATATGTTACCTTTTCCTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATCTGCACACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAACGCGATGGAATTTATTCATGAAATTGGTTGGCTGTTTCATAGAAACCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCAAGAAGGGACCGTGGATGCTGGAGGTCACCCGTCCTTGAATCTCGCATTGATGGAAATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTTGAGCTACTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGACAGTGAATCCGTTGATGGAGGGACCGATAGCTTCCTGTTTAGACCTAATGCCATAGGCCCAGCTGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGAAGTTCTTGATGCATTAACCAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGGGCTCGAGACAGCACGGGCTCAACACCGGAGGATTATGCCCATTTACGTGGTCATTACTCGTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTTCAGCTAGGCATGTAGTGCTGGACATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATGAAAAGCAAAACACTGATTTGACTTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCATTGCAGGCTTTGTGTCAGGAAACCGCTTGGTTGTGGAACATCGTCTAGCGCGTCTCTGGTCTACAGGCCTGCAATGCTTTCGATGCTGGCCATTGCTGCTGTCTGTGTTTGCGTGGCAGTCCTATTTAAAAGCTCACCCGAGGTTTTCTTTGTATTCCGGCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 3036 44.76 MEAGYGSEACQWYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVKSDHLSRQLFPIVSGIPLTNGGSLNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASNALVANVLQRFCQQCSRFQVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLSRVLANLHSNGSNQTTDQNLLSHLIRSIACQSSEHGGKNLSGIPQNLLNNRALLGKSDLVSTFLSNGPQVPLRSSKQHDTIPISETPVQAIGRGGDTPAISSTKPSTSNSPPAYSEIRDSTDGQCKMTDFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVVRAQVLNWLSHSPTEIESYIRPGCVVLTIYLRQTEAAWDNLCHDLSTSFNRLLDVSDDAFWRTGWVYVRVQHQIAIVYHGQVVVDTALPLRNKNYRRITSVNPVAVSTSKKAMFSVKGINLNQPTTRLLCAIEGKYLTQEASDESTESGDILKAQDDSQYVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICTLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLQEGTVDAGGHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSESVDGGTDSFLFRPNAIGPAGLTPLHIAAGKDDSEEVLDALTNDPGMVGVEAWKRARDSTGSTPEDYAHLRGHYSYIRLVQRKINKRSSARHVVLDIPSSLSDGSWNEKQNTDLTSSRFEIGRTELKPSQQHCRLCVRKPLGCGTSSSASLVYRPAMLSMLAIAAVCVCVAVLFKSSPEVFFVFRPFRWELLDYGTS 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21778041 21787980 - Lsi03G011480.1 Lsi03g01148 658898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01148 1011 MobiDBLite consensus disorder prediction 220 243 - -
Lsi03g01148 1011 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Lsi03g01148 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1010 IPR044817 GO:0003677
Lsi03g01148 1011 MobiDBLite consensus disorder prediction 323 338 - -
Lsi03g01148 1011 MobiDBLite consensus disorder prediction 417 452 - -
Lsi03g01148 1011 Pfam SBP domain 156 229 IPR004333 GO:0003677
Lsi03g01148 1011 Gene3D - 751 908 IPR036770 -
Lsi03g01148 1011 MobiDBLite consensus disorder prediction 323 379 - -
Lsi03g01148 1011 SUPERFAMILY Ankyrin repeat 778 893 IPR036770 -
Lsi03g01148 1011 MobiDBLite consensus disorder prediction 353 371 - -
Lsi03g01148 1011 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Lsi03g01148 1011 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Lsi03g01148 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1010 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01148 - - - csv:101203103 1853.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01148 Lsi-Chr3:21778041 Lsi04g02436 Lsi-Chr4:31413790 2.04E-15 dispersed
Lsi05g01490 Lsi-Chr5:22688528 Lsi03g01148 Lsi-Chr3:21778041 5.89E-21 dispersed
Lsi11g01701 Lsi-Chr11:25177923 Lsi03g01148 Lsi-Chr3:21778041 1.39E-22 dispersed
Lsi03g01148 Lsi-Chr3:21778041 Lsi03g01153 Lsi-Chr3:21830486 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01153 . 180 1012 SBP-box Gene Family AT2G47070 55.1 7.3e-238 820.5
Lsi03g01148 . 180 1011 SBP-box Gene Family AT2G47070 53.8 6.4e-234 807.4
Lsi03g01153 . 25 1012 SBP-box Gene Family AT3G60030 54.2 2.7e-274 941.8
Lsi03g01148 . 25 1011 SBP-box Gene Family AT3G60030 53.2 1.0e-273 939.9
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50570 55.3 8.7e-40 161.4
Lsi02g00137 . 118 276 SBP-box Gene Family AT1G69170 54.1 1.8e-41 167.2
Lsi03g01153 . 180 1012 SBP-box Gene Family AT2G47070 55.1 7.3e-238 820.5
Lsi03g01148 . 180 1011 SBP-box Gene Family AT2G47070 53.8 6.4e-234 807.4
Lsi02g00137 . 118 276 SBP-box Gene Family AT1G69170 54.1 1.8e-41 167.2
Lsi03g01153 . 25 1012 SBP-box Gene Family AT3G60030 54.2 2.7e-274 941.8
Lsi03g01148 . 25 1011 SBP-box Gene Family AT3G60030 53.2 1.0e-273 939.9
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50570 55.3 8.7e-40 161.4
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50670 55.3 8.7e-40 161.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24998 PF03110 SBP 3.50E-29 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01148 Lsi_Chr03 FPKM 16.937405 18.138863 39.926498 39.868305 126.266548 116.55098 131.301865 21.400915 21.636278 22.254513