Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01148 ATGGAGGCTGGATATGGAAGCGAAGCTTGTCAATGGTATGGTATGGGTACCATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTGAAATCTGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTGACAAACGGGGGTTCGTTGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATTGAAGATGAGAATCTTAATGATGAAGCGCGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGAGGAAATTCCAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAATGCATTCTAAGGCGAGTAATGCACTTGTTGCAAATGTTCTGCAGCGATTCTGTCAACAATGTAGCAGGTTCCAGGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGTTATTTACTGTTAACACTATCGCGAGTACTTGCAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGAATCTTCTTTCTCATCTTATACGAAGTATTGCCTGCCAATCTAGTGAGCATGGGGGGAAAAACCTATCTGGGATTCCCCAGAATTTGCTGAACAACAGGGCATTACTTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAGGTACCTTTGAGATCTTCTAAACAACATGACACGATACCTATATCTGAGACACCAGTACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTACTAAACCAAGCACTTCAAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGATGGGCAGTGCAAGATGACGGACTTCGATCTGAACGATGCTTATGTTGACTCAGACGATGGCATGGAAGATATTGAGAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCACGTTGTGCGAGCTCAGGTTCTCAATTGGTTATCACACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGGCAGACTGAAGCTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAGAACTGGATGGGTTTACGTGCGGGTTCAGCATCAAATAGCCATTGTTTATCATGGTCAGGTTGTAGTTGACACCGCCTTGCCTCTTAGAAACAAGAATTACCGTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCCACATCTAAGAAGGCTATGTTTTCAGTTAAAGGAATAAACTTGAACCAACCTACAACTAGGTTACTCTGCGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCAGATGAGTCAACAGAAAGTGGTGATATCTTGAAGGCGCAAGATGACAGCCAATATGTTACCTTTTCCTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATCTGCACACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAACGCGATGGAATTTATTCATGAAATTGGTTGGCTGTTTCATAGAAACCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCAAGAAGGGACCGTGGATGCTGGAGGTCACCCGTCCTTGAATCTCGCATTGATGGAAATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTTGAGCTACTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGACAGTGAATCCGTTGATGGAGGGACCGATAGCTTCCTGTTTAGACCTAATGCCATAGGCCCAGCTGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGAAGTTCTTGATGCATTAACCAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGGGCTCGAGACAGCACGGGCTCAACACCGGAGGATTATGCCCATTTACGTGGTCATTACTCGTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTTCAGCTAGGCATGTAGTGCTGGACATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATGAAAAGCAAAACACTGATTTGACTTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCATTGCAGGCTTTGTGTCAGGAAACCGCTTGGTTGTGGAACATCGTCTAGCGCGTCTCTGGTCTACAGGCCTGCAATGCTTTCGATGCTGGCCATTGCTGCTGTCTGTGTTTGCGTGGCAGTCCTATTTAAAAGCTCACCCGAGGTTTTCTTTGTATTCCGGCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 3036 44.76 MEAGYGSEACQWYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVKSDHLSRQLFPIVSGIPLTNGGSLNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASNALVANVLQRFCQQCSRFQVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLSRVLANLHSNGSNQTTDQNLLSHLIRSIACQSSEHGGKNLSGIPQNLLNNRALLGKSDLVSTFLSNGPQVPLRSSKQHDTIPISETPVQAIGRGGDTPAISSTKPSTSNSPPAYSEIRDSTDGQCKMTDFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVVRAQVLNWLSHSPTEIESYIRPGCVVLTIYLRQTEAAWDNLCHDLSTSFNRLLDVSDDAFWRTGWVYVRVQHQIAIVYHGQVVVDTALPLRNKNYRRITSVNPVAVSTSKKAMFSVKGINLNQPTTRLLCAIEGKYLTQEASDESTESGDILKAQDDSQYVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICTLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLQEGTVDAGGHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSESVDGGTDSFLFRPNAIGPAGLTPLHIAAGKDDSEEVLDALTNDPGMVGVEAWKRARDSTGSTPEDYAHLRGHYSYIRLVQRKINKRSSARHVVLDIPSSLSDGSWNEKQNTDLTSSRFEIGRTELKPSQQHCRLCVRKPLGCGTSSSASLVYRPAMLSMLAIAAVCVCVAVLFKSSPEVFFVFRPFRWELLDYGTS 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21778041 21787980 - Lsi03G011480.1 Lsi03g01148 658898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01148 1011 MobiDBLite consensus disorder prediction 220 243 - -
Lsi03g01148 1011 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Lsi03g01148 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1010 IPR044817 GO:0003677
Lsi03g01148 1011 MobiDBLite consensus disorder prediction 323 338 - -
Lsi03g01148 1011 MobiDBLite consensus disorder prediction 417 452 - -
Lsi03g01148 1011 Pfam SBP domain 156 229 IPR004333 GO:0003677
Lsi03g01148 1011 Gene3D - 751 908 IPR036770 -
Lsi03g01148 1011 MobiDBLite consensus disorder prediction 323 379 - -
Lsi03g01148 1011 SUPERFAMILY Ankyrin repeat 778 893 IPR036770 -
Lsi03g01148 1011 MobiDBLite consensus disorder prediction 353 371 - -
Lsi03g01148 1011 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Lsi03g01148 1011 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Lsi03g01148 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1010 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01148 Lsi-Chr3:21778041 Lsi04g02436 Lsi-Chr4:31413790 2.04E-15 dispersed
Lsi05g01490 Lsi-Chr5:22688528 Lsi03g01148 Lsi-Chr3:21778041 5.89E-21 dispersed
Lsi11g01701 Lsi-Chr11:25177923 Lsi03g01148 Lsi-Chr3:21778041 1.39E-22 dispersed
Lsi03g01148 Lsi-Chr3:21778041 Lsi03g01153 Lsi-Chr3:21830486 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24998 PF03110 SBP 3.50E-29 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01148 - - csv:101203103 1853.18