Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01153 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGGGTACTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTGGAATCTGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTGACAAACGGGGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATTGAAGATGAGAATCTTAATGATGAAGCGCGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTCGCTGGAGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAATGCATTCTAAGGCGAGTAATGCACTTGTTGCAAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCAGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGTTATTTACTGTTAACACTATCGCGAATACTTGTAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAATTCTTGCCTGCCAATCTAATGAGCACGGGGGAAAAAACCTATCTGGGATTCCCCAGAATTTGCTGAACAATGGGGCATTACTTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTTCTCAGGTCCCTTTGAGATCTTCTAAACAACATGACACGATACCTACATCTGAGACACCAGTACAAGCCATTGGTAGGGGTGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCAAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAACGATGCGTATGTTGACTCAGACGATGGCATGGAAGATATTGAGAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTAAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCACACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGGCAGACTGAAGCTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAGAACTGGATGGGTTTACGTGCGGATTCAGCATCAAATAGCTATTGTTTATCATGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAAGAATTACCGTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCTACATCTAAGAAGGCTATGTTTTCAGTTAAAGGAATAAACTTGAACCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCAGATGAGTCAACAGAAAGTGGTGATAACTTGAAGGCGCAAGATGACAGCCAATGTGTTACCTTTTCCTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATCTGCACACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCGAATTCTGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAATGCGATGGAATTTATTCATGAAATTGGTTGGCTGTTTCATAGAAACCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCGAGATGGGACCGTGGATGCTGGAGATCACCCGTCCTTGAATCTCGCATTGATGGAGATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCATTGGTCGAGCTACTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGACAGTGGATCCGTTGATGGAGGGACCGATAGCTTCCTGTTTAGACCTAATGCCATAGGCCCGGCTGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGAAGTTCTTGATGCATTAACCAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCGTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTAGTGCTGGACATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATCAAAAGCAAAACATTGATTTGACTTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCATTGCAGGCTTTGTGTCAGGAAACCGCTGGGTTGTGGAACAGCGTCCAGCGCGTCTCTGGTCTACAGGCCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTCTGTGTTTGCGTGGCACTCCTATTTAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGGCCCTTCCAATGGGAACTATTAGATTACGGTACTAGTTAG 3039 44.69 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGSWEGTSGKKTKFAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLSRILVNLHSNGSNQTTDQDLLSHLIRILACQSNEHGGKNLSGIPQNLLNNGALLGKSDLVSTFLSNGSQVPLRSSKQHDTIPTSETPVQAIGRGGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEAAWDNLCHDLSTSFNRLLDVSDDAFWRTGWVYVRIQHQIAIVYHGQVVVDTSLPLRNKNYRRITSVNPVAVSTSKKAMFSVKGINLNQPTTRLLCAIEGKYLTQEASDESTESGDNLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICTLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLRDGTVDAGDHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSGSVDGGTDSFLFRPNAIGPAGLTPLHIAAGKDDSEEVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNIDLTSSRFEIGRTELKPSQQHCRLCVRKPLGCGTASSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFQWELLDYGTS 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21830486 21837777 - Lsi03G011530.1 Lsi03g01153 658903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01153 1012 SUPERFAMILY Ankyrin repeat 781 894 IPR036770 -
Lsi03g01153 1012 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Lsi03g01153 1012 MobiDBLite consensus disorder prediction 324 341 - -
Lsi03g01153 1012 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Lsi03g01153 1012 MobiDBLite consensus disorder prediction 324 371 - -
Lsi03g01153 1012 Pfam SBP domain 156 229 IPR004333 GO:0003677
Lsi03g01153 1012 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1011 - -
Lsi03g01153 1012 MobiDBLite consensus disorder prediction 355 371 - -
Lsi03g01153 1012 Gene3D - 752 908 IPR036770 -
Lsi03g01153 1012 MobiDBLite consensus disorder prediction 222 244 - -
Lsi03g01153 1012 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1011 IPR044817 GO:0003677
Lsi03g01153 1012 MobiDBLite consensus disorder prediction 418 453 - -
Lsi03g01153 1012 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01153 - - - csv:101203103 1891.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01153 Lsi-Chr3:21830486 Lsi04g02436 Lsi-Chr4:31413790 2.99E-15 dispersed
Lsi03g01148 Lsi-Chr3:21778041 Lsi03g01153 Lsi-Chr3:21830486 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01153 . 180 1012 SBP-box Gene Family AT2G47070 55.1 7.3e-238 820.5
Lsi03g01148 . 180 1011 SBP-box Gene Family AT2G47070 53.8 6.4e-234 807.4
Lsi03g01153 . 25 1012 SBP-box Gene Family AT3G60030 54.2 2.7e-274 941.8
Lsi03g01148 . 25 1011 SBP-box Gene Family AT3G60030 53.2 1.0e-273 939.9
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50570 55.3 8.7e-40 161.4
Lsi02g00137 . 118 276 SBP-box Gene Family AT1G69170 54.1 1.8e-41 167.2
Lsi03g01153 . 180 1012 SBP-box Gene Family AT2G47070 55.1 7.3e-238 820.5
Lsi03g01148 . 180 1011 SBP-box Gene Family AT2G47070 53.8 6.4e-234 807.4
Lsi02g00137 . 118 276 SBP-box Gene Family AT1G69170 54.1 1.8e-41 167.2
Lsi03g01153 . 25 1012 SBP-box Gene Family AT3G60030 54.2 2.7e-274 941.8
Lsi03g01148 . 25 1011 SBP-box Gene Family AT3G60030 53.2 1.0e-273 939.9
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50570 55.3 8.7e-40 161.4
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50670 55.3 8.7e-40 161.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24999 PF03110 SBP 7.80E-30 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01153 Lsi_Chr03 FPKM 25.110888 30.661959 10.734217 11.028528 4.892118 4.361915 3.687762 31.986492 34.98093 30.464809