Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01153 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGGGTACTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTGGAATCTGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTGACAAACGGGGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATTGAAGATGAGAATCTTAATGATGAAGCGCGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTCGCTGGAGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAATGCATTCTAAGGCGAGTAATGCACTTGTTGCAAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCAGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGTTATTTACTGTTAACACTATCGCGAATACTTGTAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAATTCTTGCCTGCCAATCTAATGAGCACGGGGGAAAAAACCTATCTGGGATTCCCCAGAATTTGCTGAACAATGGGGCATTACTTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTTCTCAGGTCCCTTTGAGATCTTCTAAACAACATGACACGATACCTACATCTGAGACACCAGTACAAGCCATTGGTAGGGGTGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCAAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAACGATGCGTATGTTGACTCAGACGATGGCATGGAAGATATTGAGAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTAAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCACACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGGCAGACTGAAGCTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAGAACTGGATGGGTTTACGTGCGGATTCAGCATCAAATAGCTATTGTTTATCATGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAAGAATTACCGTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCTACATCTAAGAAGGCTATGTTTTCAGTTAAAGGAATAAACTTGAACCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCAGATGAGTCAACAGAAAGTGGTGATAACTTGAAGGCGCAAGATGACAGCCAATGTGTTACCTTTTCCTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATCTGCACACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCGAATTCTGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAATGCGATGGAATTTATTCATGAAATTGGTTGGCTGTTTCATAGAAACCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCGAGATGGGACCGTGGATGCTGGAGATCACCCGTCCTTGAATCTCGCATTGATGGAGATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCATTGGTCGAGCTACTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGACAGTGGATCCGTTGATGGAGGGACCGATAGCTTCCTGTTTAGACCTAATGCCATAGGCCCGGCTGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGAAGTTCTTGATGCATTAACCAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCGTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTAGTGCTGGACATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATCAAAAGCAAAACATTGATTTGACTTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCATTGCAGGCTTTGTGTCAGGAAACCGCTGGGTTGTGGAACAGCGTCCAGCGCGTCTCTGGTCTACAGGCCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTCTGTGTTTGCGTGGCACTCCTATTTAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGGCCCTTCCAATGGGAACTATTAGATTACGGTACTAGTTAG 3039 44.69 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGSWEGTSGKKTKFAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLSRILVNLHSNGSNQTTDQDLLSHLIRILACQSNEHGGKNLSGIPQNLLNNGALLGKSDLVSTFLSNGSQVPLRSSKQHDTIPTSETPVQAIGRGGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEAAWDNLCHDLSTSFNRLLDVSDDAFWRTGWVYVRIQHQIAIVYHGQVVVDTSLPLRNKNYRRITSVNPVAVSTSKKAMFSVKGINLNQPTTRLLCAIEGKYLTQEASDESTESGDNLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICTLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLRDGTVDAGDHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSGSVDGGTDSFLFRPNAIGPAGLTPLHIAAGKDDSEEVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNIDLTSSRFEIGRTELKPSQQHCRLCVRKPLGCGTASSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFQWELLDYGTS 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21830486 21837777 - Lsi03G011530.1 Lsi03g01153 658903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01153 1012 SUPERFAMILY Ankyrin repeat 781 894 IPR036770 -
Lsi03g01153 1012 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Lsi03g01153 1012 MobiDBLite consensus disorder prediction 324 341 - -
Lsi03g01153 1012 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Lsi03g01153 1012 MobiDBLite consensus disorder prediction 324 371 - -
Lsi03g01153 1012 Pfam SBP domain 156 229 IPR004333 GO:0003677
Lsi03g01153 1012 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1011 - -
Lsi03g01153 1012 MobiDBLite consensus disorder prediction 355 371 - -
Lsi03g01153 1012 Gene3D - 752 908 IPR036770 -
Lsi03g01153 1012 MobiDBLite consensus disorder prediction 222 244 - -
Lsi03g01153 1012 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1011 IPR044817 GO:0003677
Lsi03g01153 1012 MobiDBLite consensus disorder prediction 418 453 - -
Lsi03g01153 1012 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01153 Lsi-Chr3:21830486 Lsi04g02436 Lsi-Chr4:31413790 2.99E-15 dispersed
Lsi03g01148 Lsi-Chr3:21778041 Lsi03g01153 Lsi-Chr3:21830486 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24999 PF03110 SBP 7.80E-30 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01153 - - csv:101203103 1891.32