Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01161 ATGTCTCGCCAAGTTCCGACCACTGCGTTCCACAAGTCCAAGACGCTTGATAACAAATATATGCTGGGAGATGAGATCGGAAAAGGAGCATATGGGCGAGTCTACAAGGGTCTGGACTTGGAGAATGGGGATTTTGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAAGAGGACCTCAACATTATCATGAACTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTTTAAAAACAAAGACTCACCTTCACATAATACTCGAGTATGTGGAGAATGGATCACTTGCCAACATTATCAAGCCGAATAAGTTTGGACCTTTTCCGGAATCGTTGGTTGCTGTTTATATTTCTCAGGGCCTTGTGAAACTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCCGATGTTAATACTCATTCAGTTGTTGGAACACCTTACTGGATGGCTCCTGAGGTAATTGAAATGTCAGGAGTTTGTGCTGCTTCTGACATATGGAGTGTTGGATGTACTGTGATCGAACTACTTACATGCTTACCTCCATATTATGATCTACAACCTATGCCCGCTCTCTTTCGCATTGTACAGCGTGCCATACCTAGGGTTGTAAGTTGTCTTGTCTGTAACTTTTCAGTTATCAATGGGAATTTTGTTTCATGTTTAAAAAATAAACCAGATCAGACTGTAGGTGGGAAGTTGTTTGACAAGCATCCTCCAATTCCGGATAGCCTATCACCAGATATCACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCTGATGCAAAAACTTTGCTTTCTCATCCTTGGATACAGAACTGTCGACGGGCTTTGCATTCTTCTCTTCGTCATAGTGGCACATTAAGAAACACTCAACAAGATGGATCAATTGAAGCAGAAATTTCTAATGGAGACAATCAAAACTCTTGTGAAAGCCCTTCGGCAGAGAAAAATGAAGTCGCGGATTCTGATTTTAAAGCTGATTCAAGGAAGGAGTTGTCACCAGATGATGCTACTGATGCGAGCAAGTCCCAAAAGCATTTTGCTTCAGGCCCTAATTTTGTTGAGGAAGGAGAAAGTCTAGAAGAAGATACACTATTGGATCAAGTTCCTACCTTATCCATTCATGAAAATTCATCTCTTCTAACTGGTTCTGGCAGACTTACTACCTCTGAGCCAACTGAGTTTCATGAATCTCATGGTAGAGCCCATGATGAAGTGATAATGAATGGTGAAGTGCCATTGGCAGAATTAAGGAAAGATGCTTCTAGAAAACATGGAGAGAAAGAAACTTCTACAACATCTGGAAGTAGATCATCTGGTTTTGAACCTGAAAGTCAGGACAATAGTTTTCAAAAGGTGTCAAAGATGTCAATTGCTTTGGGAGGAGATGAGCTGAGTAAATTTAGTGACACTCCTGGAGATGCTTCCTTAGATGATTTATTCCAACCTCTAGATAAGCACCCCGGGGATCAAGCTGCTGGAGCATCAACATCTCTATCTACTGTACAATCAAACATGGGTAATGTGCCAGTAAATGATGTTGGGAAAAATGACCTGGCCACAAAATTGAGGGCTACGATTGCTCAAAAACAAATGGAAAATGAAATGGGACAGGCAAGTGGTGGGGGTGACCTGCTTCGACTAGTGATGGGTGTTTTAAAGGATGATGATATTGATATCGATGGTTTGGTTTTTGATGAGAAGTTGCCCGGAGAGAACCTTTTTCCTTTGCAGGCTGTTGAATTCGGCAGATTAGTTGGGTCATTGAGACCTGATGAACCTGAAGATGTAATTGTATCTGCCTGTCAAAAACTGATTGCTATCTTTCATCAAAGACCTGAGCAGAAAATTGTATATGTTACACAGCATGGTCTACTCCCATTAACTGAGTTGCTTGAAGTTCCTAAAACTCGTATTATATGTTCAGTGCTCCAGCTTATAAATCAGATAGTTAAGGATAATGTTGACTTCCAAGAAAATGCCTGTCTTGTCGGTCTAATTCCTCTGGTAATGGGCTTTGCAGTTCCAGATCGTCCCCGAGAAGTTCGTATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTTGTCGCGTGCCGTGGAATACCTGTATTAGTAAGCTTTTTAGAGGCTGACTATGCGAAGTACAGGGACATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTTAAGCTCCAGCGTTCCACTCTTAGAAATGGTTTCTGTCGTATAGCAGCAAAAAGTGGAATTCTGCTTAGGCTTATTAACACCCTCTACAGCTTGAACGAGGCAACTCGCTTAGCTTCCATAACAGTTGGGGCAGGATATCCCATTGATGGTTTAACTCAACGGCCACGATCAGGTCAACTAGATCCTATCCACCCTATATTCAGTCAGTATGAGGCCTCATTTCCTATGCCTGATCAACCTGATCTTTTGAAGGTCAGGCATGGAATAGTTGATCATCACCTGTCCACCGGACCACCAGAACCTTCCAGGGCTTCAACTTCACATTCTCAAAGATCAGATGCCAATCAATCTGATAACCGACACTTTTCCATAGATGCTGATAGGCCTCAATCTAGCAATGCCACAAATGAAGCCTTGGGATCTTTGGATAAAGTTTTACATTTAGCAAGCAAGGAACCGTCTGGCTCGGCTTCGAAAGAATATGAAACTGTAGATAGATGGAGAACTGAGAGAATGGCCAACTCTAATAGGACTTCCACAGATAGGCCTCCAAAATTGGTGGAACCTGCATCTAATGGATTTCTTACAACATTGGCCGCTACTCAGCAAGAACAAGTTCGGCCCCTTCTAAGTCTGTTGGACAAAGAACCCCCGTCTCGACATTTTTCCGGTCAGCTTGAGTACATGCGCCAACTTTCTGGATTGGAGAGACATGAAACTATAATGCCTCTATTGCATGCATCAAATGAAAAGAAGATAAATGGGGAGCATGATTTCTTAATGGCAGAATTCGCTGAGGTTTCTCAACGTGGAAAGGACAATGGAAATTTTGACCCCACTTCTAAGGTTTCTCTTAAAACGACGGCAAAGAAGGTAGGGCCCCTGATTTCCAATGAAGGAGCTGCATCCACGTCTGGAATTGCTTCACAGACAGCATCTGGGGTACTTTCAGGTTCGGGCGTATTAAATGCTAGACCAGGGAGTGCAACATCCTCTGGACTTCTTTCGCACATGGTTTCAACCCTGAACGCTGATGTTGCAAGGGAATACCTGGCGAAGGTGGCTGATCTATTGCTCGAGTTTGCTCAGGCAGATACAACTGTGAAGTCATATATGTGCAGCCAAAGCTTGCTTAATCGCCTTTTCCAGATGTTCAATAGGGTAGAGCCCCCAATTCTCTTGAAGATATTGAAGTGTATAAATCATCTATCAACAGATCCAAATTGCTTAGAAAATCTTCAGCGAGCAGATGCAATTAAATATTTGATTCCGAACCTTGAACTCAAAGAAGGGTCACTGGTGTCGCAAATACATACTGAGGTCCTCAGTGCACTATTCAATTTGTGCAAGATAAATAAGAGGAGACAAGAATATGCAGCTGAAAATGGAATTATTCCACACTTAATGCATTTTATTATATCAGACTCTCCTCTGAAACAATATGCATTGCCTCTACTGTGTGATATGGCCCATGCATCTCGTAATTCCAGAGAGCAGTTAAGAGCCCACGGTGGATTAGATGTGTATTTGAGCCTGCTTGAGGATGAGCTTTGGTCTGTCACGGCATTGGATTCTATTGCTGTTTGCTTGGCTCATGATAATGACAACCGAAAAGTTGAACAAGCTTTGCTGAAAAAGGATGCAGTTCAGAAATTGGTGAAGTTTTTCCAGTGCTGTCCAGAACAACATTTTGTCCATATATTGGAGCCTTTCTTGAAAATCATCACGAAATCTTCTCGAATCAATACGACATTAGCCGTCAATGGATTGACCCCATTGCTTATAGCAAGGCTGGACCACCAGGATGCGATTGCTCGGCTTAATCTACTTAAACTGATTAAGCGACTCAATATCGAACAAATGTCGACGATATTCTTGTTGTTTGATTTGAAATTTGAATGTACAATGTTGGTCGTGTGGCAGGCGGTGTATGAGCATCATCCACGACCCAAGCAGTTGATTGTGGAGAATGATTTACCTCATAAACTTCAGAATTTGATTGAGGAACGCAGGGATGGACAACGGTCTGGCGGGCAAGTGTTGGTGAAACAAATGGCCACATCTCTGCTTAAAGCTCTTCATATAAATACCGTTTTGTAA 4338 42.14 MSRQVPTTAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCLPPYYDLQPMPALFRIVQRAIPRVVSCLVCNFSVINGNFVSCLKNKPDQTVGGKLFDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWIQNCRRALHSSLRHSGTLRNTQQDGSIEAEISNGDNQNSCESPSAEKNEVADSDFKADSRKELSPDDATDASKSQKHFASGPNFVEEGESLEEDTLLDQVPTLSIHENSSLLTGSGRLTTSEPTEFHESHGRAHDEVIMNGEVPLAELRKDASRKHGEKETSTTSGSRSSGFEPESQDNSFQKVSKMSIALGGDELSKFSDTPGDASLDDLFQPLDKHPGDQAAGASTSLSTVQSNMGNVPVNDVGKNDLATKLRATIAQKQMENEMGQASGGGDLLRLVMGVLKDDDIDIDGLVFDEKLPGENLFPLQAVEFGRLVGSLRPDEPEDVIVSACQKLIAIFHQRPEQKIVYVTQHGLLPLTELLEVPKTRIICSVLQLINQIVKDNVDFQENACLVGLIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYRDMVHLAIDGMWQIFKLQRSTLRNGFCRIAAKSGILLRLINTLYSLNEATRLASITVGAGYPIDGLTQRPRSGQLDPIHPIFSQYEASFPMPDQPDLLKVRHGIVDHHLSTGPPEPSRASTSHSQRSDANQSDNRHFSIDADRPQSSNATNEALGSLDKVLHLASKEPSGSASKEYETVDRWRTERMANSNRTSTDRPPKLVEPASNGFLTTLAATQQEQVRPLLSLLDKEPPSRHFSGQLEYMRQLSGLERHETIMPLLHASNEKKINGEHDFLMAEFAEVSQRGKDNGNFDPTSKVSLKTTAKKVGPLISNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLNRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKRLNIEQMSTIFLLFDLKFECTMLVVWQAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21951256 21972659 + Lsi03G011610.1 Lsi03g01161 658911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01161 1445 MobiDBLite consensus disorder prediction 383 398 - -
Lsi03g01161 1445 Gene3D Phosphorylase Kinase; domain 1 13 100 - -
Lsi03g01161 1445 SUPERFAMILY Protein kinase-like (PK-like) 17 278 IPR011009 -
Lsi03g01161 1445 PANTHER MAP KINASE KINASE KINASE 120 202 - -
Lsi03g01161 1445 Gene3D - 1068 1440 IPR011989 -
Lsi03g01161 1445 Pfam Protein tyrosine and serine/threonine kinase 22 104 IPR001245 GO:0004672|GO:0006468
Lsi03g01161 1445 SMART arm_5 619 659 IPR000225 GO:0005515
Lsi03g01161 1445 SMART arm_5 1198 1237 IPR000225 GO:0005515
Lsi03g01161 1445 SMART arm_5 704 747 IPR000225 GO:0005515
Lsi03g01161 1445 SMART arm_5 1152 1196 IPR000225 GO:0005515
Lsi03g01161 1445 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Lsi03g01161 1445 MobiDBLite consensus disorder prediction 845 859 - -
Lsi03g01161 1445 Gene3D - 584 788 IPR011989 -
Lsi03g01161 1445 Pfam Protein kinase domain 120 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01161 1445 PANTHER MAP KINASE KINASE KINASE 2 120 - -
Lsi03g01161 1445 PANTHER MAP KINASE KINASE KINASE 237 1374 - -
Lsi03g01161 1445 SUPERFAMILY ARM repeat 592 1303 IPR016024 -
Lsi03g01161 1445 ProSiteProfiles Protein kinase domain profile. 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01161 1445 MobiDBLite consensus disorder prediction 399 413 - -
Lsi03g01161 1445 MobiDBLite consensus disorder prediction 383 457 - -
Lsi03g01161 1445 MobiDBLite consensus disorder prediction 423 438 - -
Lsi03g01161 1445 MobiDBLite consensus disorder prediction 291 357 - -
Lsi03g01161 1445 MobiDBLite consensus disorder prediction 471 507 - -
Lsi03g01161 1445 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 120 - -
Lsi03g01161 1445 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 120 202 - -
Lsi03g01161 1445 Gene3D Transferase(Phosphotransferase) domain 1 101 355 - -
Lsi03g01161 1445 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 237 1374 - -
Lsi03g01161 1445 MobiDBLite consensus disorder prediction 837 881 - -
Lsi03g01161 1445 MobiDBLite consensus disorder prediction 439 457 - -
Lsi03g01161 1445 MobiDBLite consensus disorder prediction 291 322 - -
Lsi03g01161 1445 CDD STKc_Cdc7_like 19 277 - -
Lsi03g01161 1445 MobiDBLite consensus disorder prediction 323 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01161 Lsi-Chr3:21951256 Lsi09g01341 Lsi-Chr9:21376951 1.60E-46 dispersed
Lsi03g01161 Lsi-Chr3:21951256 Lsi01g00997 Lsi-Chr1:8231330 2.04E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83485 PF00069 Pkinase 3.20E-24 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01161 - - csv:101206469 2548.85