Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01162 ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCGAATAGGCGGCGGACGATTAACGCGCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGCATTAAGGATGACCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAGCCCTCTGCCATTCAGCAGAGAGCTGTGAGACCGATTATTGAGGGTCGAGATGTTATTGCTCAGGCCCAATCTGGAACTGGAAAGACCTCTATGATTGCTCTTACCGTTTGCCAGATGGTTGATACCTCCAGTAGAGAGGTACAGGCCTTGATCTTGTCTCCTACGAGAGAATTGGCAACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTATATTAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGACGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTAGTTCTGGATGAGTCTGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTACGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACGAACAAGTTTATGACAGACCCTGTGAGAATTCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTTGTTGCGGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACTCAAGCTGTAATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTTCGATCAGGCACTACCCGTGTCCTAATCACTACTGATGTTTGGGCACGAGGGCTTGATGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATCGAGCAATACTACAGTACACAGATTGATGAGATGCCCATGAACGTTGCTGATTTAATTTAA 1224 44.28 MAAAATTSVVPPNRRRTINAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21973492 21978640 - Lsi03G011620.1 Lsi03g01162 658912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01162 407 CDD SF2_C_DEAD 250 377 - -
Lsi03g01162 407 Gene3D - 246 407 IPR027417 -
Lsi03g01162 407 Gene3D - 27 245 IPR027417 -
Lsi03g01162 407 Pfam Helicase conserved C-terminal domain 263 368 IPR001650 -
Lsi03g01162 407 SMART helicmild6 290 368 IPR001650 -
Lsi03g01162 407 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676|GO:0005524
Lsi03g01162 407 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Lsi03g01162 407 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Lsi03g01162 407 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 407 IPR001650 -
Lsi03g01162 407 SMART ultradead3 56 253 IPR014001 -
Lsi03g01162 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 390 IPR027417 -
Lsi03g01162 407 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Lsi03g01162 407 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 400 - -
Lsi03g01162 407 PANTHER BNAC03G41130D PROTEIN 22 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01162 Lsi-Chr3:21973492 Lsi07g00592 Lsi-Chr7:6285937 2.16E-175 dispersed
Lsi03g01162 Lsi-Chr3:21973492 Lsi02g02921 Lsi-Chr2:35428963 2.47E-179 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01162 K13025 - csv:101222664 793.112