Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01162 | ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCGAATAGGCGGCGGACGATTAACGCGCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGCATTAAGGATGACCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAGCCCTCTGCCATTCAGCAGAGAGCTGTGAGACCGATTATTGAGGGTCGAGATGTTATTGCTCAGGCCCAATCTGGAACTGGAAAGACCTCTATGATTGCTCTTACCGTTTGCCAGATGGTTGATACCTCCAGTAGAGAGGTACAGGCCTTGATCTTGTCTCCTACGAGAGAATTGGCAACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTATATTAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGACGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTAGTTCTGGATGAGTCTGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTACGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACGAACAAGTTTATGACAGACCCTGTGAGAATTCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTTGTTGCGGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACTCAAGCTGTAATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTTCGATCAGGCACTACCCGTGTCCTAATCACTACTGATGTTTGGGCACGAGGGCTTGATGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATCGAGCAATACTACAGTACACAGATTGATGAGATGCCCATGAACGTTGCTGATTTAATTTAA | 1224 | 44.28 | MAAAATTSVVPPNRRRTINAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI | 407 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 21973492 | 21978640 | - | Lsi03G011620.1 | Lsi03g01162 | 658912 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01162 | 407 | CDD | SF2_C_DEAD | 250 | 377 | - | - | |
Lsi03g01162 | 407 | Gene3D | - | 246 | 407 | IPR027417 | - | |
Lsi03g01162 | 407 | Gene3D | - | 27 | 245 | IPR027417 | - | |
Lsi03g01162 | 407 | Pfam | Helicase conserved C-terminal domain | 263 | 368 | IPR001650 | - | |
Lsi03g01162 | 407 | SMART | helicmild6 | 290 | 368 | IPR001650 | - | |
Lsi03g01162 | 407 | Pfam | DEAD/DEAH box helicase | 62 | 224 | IPR011545 | GO:0003676|GO:0005524 | |
Lsi03g01162 | 407 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 37 | 65 | IPR014014 | GO:0003724 | |
Lsi03g01162 | 407 | CDD | DEADc_EIF4AIII_DDX48 | 39 | 239 | - | - | |
Lsi03g01162 | 407 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 249 | 407 | IPR001650 | - | |
Lsi03g01162 | 407 | SMART | ultradead3 | 56 | 253 | IPR014001 | - | |
Lsi03g01162 | 407 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 105 | 390 | IPR027417 | - | |
Lsi03g01162 | 407 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 238 | IPR014001 | - | |
Lsi03g01162 | 407 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 22 | 400 | - | - | |
Lsi03g01162 | 407 | PANTHER | BNAC03G41130D PROTEIN | 22 | 400 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01162 | Lsi-Chr3:21973492 | Lsi07g00592 | Lsi-Chr7:6285937 | 2.16E-175 | dispersed | |
Lsi03g01162 | Lsi-Chr3:21973492 | Lsi02g02921 | Lsi-Chr2:35428963 | 2.47E-179 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01162 | K13025 | - | csv:101222664 | 793.112 |