Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01176 | ATGTTTAGCTCCGGCAACCTCACCGTCATCTCCTCCCGTGAATTCCCGTCTCAGAGATTGGTTGTATGGAAGCTCTTCTTCTTACCTGACATCCAAATTTTAGAGATCATCATTGCAATTTCTGTTTTTACAGCAATAAAATCATTGAGGCAAAAGAGAAAACAGGGGCTACCTGAGTGGCCGATCATCGGAATGTTACCGTCTTTAGTCGCGGGGCTCCAAAGCAACTTGTATGAATGGATCACCGAAGTGCTGTACCATCAAAATGGAACTTTCCGATTCAAAGGGCCATGGTTTAGTAGCTTGAATTGTGTTGTAACTTCAGATCCTCGCAACATTGAGCACATTCTGAAAACAGAGTTTCCCAAGTACCCAAAAGGCTCCTTCTTCCGTGAAACAGTCCGTGACCTTCTAGGCGACGGAATCTTCAACGCCGATGGCGAGATTTGGCACCGGCAGAGGAAGACAGCCAGCATCGAATTCCATTCAGCAAAGTTCCGGCAACTCACCGTGGAGTCTCTCCACGAGTTAGTCCACTCTCGGCTCCTCCCTGTTTTACACAGGCATTTCGTCGAACAGTTGGTGCCCATTGATCTCCAAGACATTCTTCTCCGCCTTACTTTCGACAATGTCTGTATGATCGCATTCGGCGTTGATCCCGGCTGTTTGAGCCCTAATTTACCGGCGATTCCCTTCGCCAACGCCTTCGAGGTGGCAACGGAAGCCACCGTCATTCGATTCGTAACTCCAAAATTCATATGGAAAACAATGAGGCATTTCAATTTAGGAACAGAAAAGAGACTCAAATTTGCCCTAAAAGAGGTCAACCAATTCGCAAAGAACGTAATTGAAAAGAGAAAAAGAGAGAATGTCAATGAAATCGAGAGATCGGACCTGTTATCGGTGTTTATGGGACTAAAGGACGAGAACGGGGAGCCATATTCAGAGAAGTTCTTGAAAGATATATGCGTGAATTTTATACTTGCCGGAAGAGATACCTCGTCGGTGGCGTTGAGTTGGTTCTTTTGGCTGATTGATCGGAATCCGGAAGTGGAAGAGAGGATTCTGGAGGAGATCTGCCGGATACTGGAGAGAAGAGGAGAGGCGGCGGCGGTGGAATCGTCGGCCGGGGATGTGGCGTTTGAAGTAGAAGAGATAAAGAAGATGGAATATTTGCAGGCCGCTCTTTCTGAAGCTTTGAGATTGTTCCCTTCTGTGCCGGTTGATCACAAGGAGGCCATTAAAGATGATGTGTTACCAGATGGAACAAAGCTAAAGAAAGGAACAAATGTGATTTATGCAATATATGCAATGGGTAGAATGGAGGCGATATGGGGAAAAGATTGCAATGAATTCAAGCCAGAGAGATGGTTAAGAGATGGTCGATTCACAGCCGAGTCAGCATACCGATTCACAGCCTTCAATGGTGGGCCTCGGCTGTGCTTGGGAAAGGATTTTGCATACTACCAAATGAAGTACACCGCCGCCACCGTCATCCTCCGCTACCGTGTTAGGGTGGCGGAAAAGCACCCGGTGATCCCAAAGCTTGCTTTGACAATGTACATAAAATATGGATTAAAGGTGAATTTGTTTAGACGTGACAAGGAAGAGTTCCAAAAGTATTTCAAAAGTAAATAA | 1638 | 46.03 | MFSSGNLTVISSREFPSQRLVVWKLFFLPDIQILEIIIAISVFTAIKSLRQKRKQGLPEWPIIGMLPSLVAGLQSNLYEWITEVLYHQNGTFRFKGPWFSSLNCVVTSDPRNIEHILKTEFPKYPKGSFFRETVRDLLGDGIFNADGEIWHRQRKTASIEFHSAKFRQLTVESLHELVHSRLLPVLHRHFVEQLVPIDLQDILLRLTFDNVCMIAFGVDPGCLSPNLPAIPFANAFEVATEATVIRFVTPKFIWKTMRHFNLGTEKRLKFALKEVNQFAKNVIEKRKRENVNEIERSDLLSVFMGLKDENGEPYSEKFLKDICVNFILAGRDTSSVALSWFFWLIDRNPEVEERILEEICRILERRGEAAAVESSAGDVAFEVEEIKKMEYLQAALSEALRLFPSVPVDHKEAIKDDVLPDGTKLKKGTNVIYAIYAMGRMEAIWGKDCNEFKPERWLRDGRFTAESAYRFTAFNGGPRLCLGKDFAYYQMKYTAATVILRYRVRVAEKHPVIPKLALTMYIKYGLKVNLFRRDKEEFQKYFKSK | 545 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 22115304 | 22118364 | - | Lsi03G011760.1 | Lsi03g01176 | 658926 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01176 | 545 | PRINTS | E-class P450 group I signature | 338 | 364 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g01176 | 545 | PRINTS | E-class P450 group I signature | 318 | 335 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g01176 | 545 | PRINTS | E-class P450 group I signature | 481 | 504 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g01176 | 545 | PRINTS | E-class P450 group I signature | 393 | 411 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g01176 | 545 | PRINTS | E-class P450 group I signature | 471 | 481 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g01176 | 545 | Gene3D | Cytochrome P450 | 52 | 544 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g01176 | 545 | Pfam | Cytochrome P450 | 58 | 517 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g01176 | 545 | PRINTS | P450 superfamily signature | 394 | 405 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g01176 | 545 | PRINTS | P450 superfamily signature | 481 | 492 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g01176 | 545 | PRINTS | P450 superfamily signature | 329 | 346 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g01176 | 545 | PRINTS | P450 superfamily signature | 472 | 481 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi03g01176 | 545 | PANTHER | CYTOCHROME P450 86B1-LIKE | 21 | 535 | - | - | |
Lsi03g01176 | 545 | PANTHER | CYTOCHROME P450 | 21 | 535 | - | - | |
Lsi03g01176 | 545 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 474 | 483 | IPR017972 | GO:0005506|GO:0016705 | |
Lsi03g01176 | 545 | SUPERFAMILY | Cytochrome P450 | 56 | 533 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01074 | Lsi-Chr1:8929050 | Lsi03g01176 | Lsi-Chr3:22115304 | 1.33E-93 | dispersed | |
Lsi02g02535 | Lsi-Chr2:31836786 | Lsi03g01176 | Lsi-Chr3:22115304 | 5.52E-30 | dispersed | |
Lsi03g01176 | Lsi-Chr3:22115304 | Lsi09g00245 | Lsi-Chr9:2581643 | 4.51E-154 | dispersed | |
Lsi06g01637 | Lsi-Chr6:26666402 | Lsi03g01176 | Lsi-Chr3:22115304 | 3.32E-116 | dispersed | |
Lsi02g02534 | Lsi-Chr2:31830474 | Lsi03g01176 | Lsi-Chr3:22115304 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01176 | K15402 | - | pvy:116130799 | 767.689 |