Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01176 ATGTTTAGCTCCGGCAACCTCACCGTCATCTCCTCCCGTGAATTCCCGTCTCAGAGATTGGTTGTATGGAAGCTCTTCTTCTTACCTGACATCCAAATTTTAGAGATCATCATTGCAATTTCTGTTTTTACAGCAATAAAATCATTGAGGCAAAAGAGAAAACAGGGGCTACCTGAGTGGCCGATCATCGGAATGTTACCGTCTTTAGTCGCGGGGCTCCAAAGCAACTTGTATGAATGGATCACCGAAGTGCTGTACCATCAAAATGGAACTTTCCGATTCAAAGGGCCATGGTTTAGTAGCTTGAATTGTGTTGTAACTTCAGATCCTCGCAACATTGAGCACATTCTGAAAACAGAGTTTCCCAAGTACCCAAAAGGCTCCTTCTTCCGTGAAACAGTCCGTGACCTTCTAGGCGACGGAATCTTCAACGCCGATGGCGAGATTTGGCACCGGCAGAGGAAGACAGCCAGCATCGAATTCCATTCAGCAAAGTTCCGGCAACTCACCGTGGAGTCTCTCCACGAGTTAGTCCACTCTCGGCTCCTCCCTGTTTTACACAGGCATTTCGTCGAACAGTTGGTGCCCATTGATCTCCAAGACATTCTTCTCCGCCTTACTTTCGACAATGTCTGTATGATCGCATTCGGCGTTGATCCCGGCTGTTTGAGCCCTAATTTACCGGCGATTCCCTTCGCCAACGCCTTCGAGGTGGCAACGGAAGCCACCGTCATTCGATTCGTAACTCCAAAATTCATATGGAAAACAATGAGGCATTTCAATTTAGGAACAGAAAAGAGACTCAAATTTGCCCTAAAAGAGGTCAACCAATTCGCAAAGAACGTAATTGAAAAGAGAAAAAGAGAGAATGTCAATGAAATCGAGAGATCGGACCTGTTATCGGTGTTTATGGGACTAAAGGACGAGAACGGGGAGCCATATTCAGAGAAGTTCTTGAAAGATATATGCGTGAATTTTATACTTGCCGGAAGAGATACCTCGTCGGTGGCGTTGAGTTGGTTCTTTTGGCTGATTGATCGGAATCCGGAAGTGGAAGAGAGGATTCTGGAGGAGATCTGCCGGATACTGGAGAGAAGAGGAGAGGCGGCGGCGGTGGAATCGTCGGCCGGGGATGTGGCGTTTGAAGTAGAAGAGATAAAGAAGATGGAATATTTGCAGGCCGCTCTTTCTGAAGCTTTGAGATTGTTCCCTTCTGTGCCGGTTGATCACAAGGAGGCCATTAAAGATGATGTGTTACCAGATGGAACAAAGCTAAAGAAAGGAACAAATGTGATTTATGCAATATATGCAATGGGTAGAATGGAGGCGATATGGGGAAAAGATTGCAATGAATTCAAGCCAGAGAGATGGTTAAGAGATGGTCGATTCACAGCCGAGTCAGCATACCGATTCACAGCCTTCAATGGTGGGCCTCGGCTGTGCTTGGGAAAGGATTTTGCATACTACCAAATGAAGTACACCGCCGCCACCGTCATCCTCCGCTACCGTGTTAGGGTGGCGGAAAAGCACCCGGTGATCCCAAAGCTTGCTTTGACAATGTACATAAAATATGGATTAAAGGTGAATTTGTTTAGACGTGACAAGGAAGAGTTCCAAAAGTATTTCAAAAGTAAATAA 1638 46.03 MFSSGNLTVISSREFPSQRLVVWKLFFLPDIQILEIIIAISVFTAIKSLRQKRKQGLPEWPIIGMLPSLVAGLQSNLYEWITEVLYHQNGTFRFKGPWFSSLNCVVTSDPRNIEHILKTEFPKYPKGSFFRETVRDLLGDGIFNADGEIWHRQRKTASIEFHSAKFRQLTVESLHELVHSRLLPVLHRHFVEQLVPIDLQDILLRLTFDNVCMIAFGVDPGCLSPNLPAIPFANAFEVATEATVIRFVTPKFIWKTMRHFNLGTEKRLKFALKEVNQFAKNVIEKRKRENVNEIERSDLLSVFMGLKDENGEPYSEKFLKDICVNFILAGRDTSSVALSWFFWLIDRNPEVEERILEEICRILERRGEAAAVESSAGDVAFEVEEIKKMEYLQAALSEALRLFPSVPVDHKEAIKDDVLPDGTKLKKGTNVIYAIYAMGRMEAIWGKDCNEFKPERWLRDGRFTAESAYRFTAFNGGPRLCLGKDFAYYQMKYTAATVILRYRVRVAEKHPVIPKLALTMYIKYGLKVNLFRRDKEEFQKYFKSK 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22115304 22118364 - Lsi03G011760.1 Lsi03g01176 658926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01176 545 PRINTS E-class P450 group I signature 338 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01176 545 PRINTS E-class P450 group I signature 318 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01176 545 PRINTS E-class P450 group I signature 481 504 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01176 545 PRINTS E-class P450 group I signature 393 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01176 545 PRINTS E-class P450 group I signature 471 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01176 545 Gene3D Cytochrome P450 52 544 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01176 545 Pfam Cytochrome P450 58 517 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01176 545 PRINTS P450 superfamily signature 394 405 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01176 545 PRINTS P450 superfamily signature 481 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01176 545 PRINTS P450 superfamily signature 329 346 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01176 545 PRINTS P450 superfamily signature 472 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01176 545 PANTHER CYTOCHROME P450 86B1-LIKE 21 535 - -
Lsi03g01176 545 PANTHER CYTOCHROME P450 21 535 - -
Lsi03g01176 545 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 474 483 IPR017972 GO:0005506|GO:0016705
Lsi03g01176 545 SUPERFAMILY Cytochrome P450 56 533 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01074 Lsi-Chr1:8929050 Lsi03g01176 Lsi-Chr3:22115304 1.33E-93 dispersed
Lsi02g02535 Lsi-Chr2:31836786 Lsi03g01176 Lsi-Chr3:22115304 5.52E-30 dispersed
Lsi03g01176 Lsi-Chr3:22115304 Lsi09g00245 Lsi-Chr9:2581643 4.51E-154 dispersed
Lsi06g01637 Lsi-Chr6:26666402 Lsi03g01176 Lsi-Chr3:22115304 3.32E-116 dispersed
Lsi02g02534 Lsi-Chr2:31830474 Lsi03g01176 Lsi-Chr3:22115304 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01176 K15402 - pvy:116130799 767.689