Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01188 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGACAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAAAAGGCTCAAGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCCAGTTCTGGACAGAGAAGATGTCTTTACTATTGTCCATCGTCTTGTCACTGTTACCACCGCGAAGATTATCTTCCTCCCCAGAAGCAAGAGCATGAGGAGATAGACATTCTAAGAGACGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACTGGCTTAGGCTTCAAAGAGTTGCAGAACCTGGAGCAACAACTAAATGAAGGGTTATTACTAGTGAAAGAAAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGTCAATGAGCTTCGTTGTCTGTTTCCGACGGTTGATTGTCCGCTGCCTGCTTATCTTGAATACTGCTCCCTAGAGCAGAAGAACATTGGCATTAGAAGCCCTGATATGGCGTGCAACTCTGAAATCGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGTAA 627 42.74 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGQRRCLYYCPSSCHCYHREDYLPPQKQEHEEIDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQVNELRCLFPTVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLG 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22316959 22320586 + Lsi03G011880.1 Lsi03g01188 658938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01188 208 Pfam K-box region 86 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi03g01188 208 Coils Coil 122 142 - -
Lsi03g01188 208 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 208 - -
Lsi03g01188 208 ProSiteProfiles K-box domain profile. 85 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi03g01188 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi03g01188 208 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Lsi03g01188 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi03g01188 208 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Lsi03g01188 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi03g01188 208 SUPERFAMILY SRF-like 2 67 IPR036879 GO:0003677|GO:0046983
Lsi03g01188 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi03g01188 208 PANTHER MADS BOX PROTEIN 1 208 - -
Lsi03g01188 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi03g01188 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi03g01188 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00809 Lsi-Chr1:6420786 Lsi03g01188 Lsi-Chr3:22316959 6.95E-28 dispersed
Lsi03g01188 Lsi-Chr3:22316959 Lsi09g01915 Lsi-Chr9:27992713 1.16E-37 dispersed
Lsi03g01188 Lsi-Chr3:22316959 Lsi04g02291 Lsi-Chr4:30056403 2.18E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25000 PF01486 K-box 3.20E-15 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01188 - - csv:101218805 303.138