Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01206 | ATGTGTGGTGGTCCAGAACAATCTAATTCTGCATCGACTACATCGGCAAGCTCACCTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAACGATACAGAAGGCTTCAAACGTTTGGTGGAGTCTGATTTGTTTTCTCTTAACAAGTCTGGTCTCTGGTATGTTCGTCAAAAAGGATCAAAACAAGTTGTTCATGAGCATAGGACACCCCTGATGGTTGCAGCTACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCATTGTGCTACTTCCAGTGGATCTGTGAATGCGGTTGATATTGTCGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTGCAAGGATGTTAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTCGAGGAACTTCTTAATAGTCATTCAAATGGATCCATGGATGTGTCCTGTCTACTTTTGTCAATCAAAACGCCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCGTCTCCACCCAAGTCTATATCTTCTCCCAAATTTACTGATGGGTTTGGTAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATCAAGAACAGCATATATGCAACTGATGAGTTTCGCATGTTCTCTTTCAAGGTTAGACCTTGTTCACGGGCATATTCCCATGATTGGACCGAGTGTCCTTTTGTACACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGAAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTTTGTAAGGATGGCACCGGTTGCAATAGGCGGGTCTGCTTCTTTGCTCACACCAACGAAGAGCTAAGGCCACTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGATCAATTGGGTCTGCACCAACTGTAATGGATATGGCCACTGCATTGGGTCTTCTTCCTGGTTCCCCCTCATCAGTGTCTGCTTTATCTCCATCTCCATTTACTCAATCCATGTCTCCCTCTTCTAATGGTGTGTCTCACTCCTCTGTGAACTGGCAGCAGCCAAATGTGCCGACTCTTCACCTACCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTCTGAATGCCAGGGATATGCCTCTGGAGGATTTAAATGTCTTGCCAGACTTTGACAACCAGCCACGGATGTTGAACGATTTGAACTGTTTCTCTCAGCCTCGTCCGAGTGCCGTGTCTGTTAGTCGATCTGGCTGGACCCAAACTCTAACACCTAACAATCTTGAAGAGCTTTTTTCTTCTGAGATCTCTTCGTCTCCCAGATTCTCTGATCCAGCTGCCAATGTTTTTTCCCCTACCCGCAAATCAACTATGCTTAACCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCCATTAATACAAGCATTATGTCCCCTAAGAATGTTGATCATCATTTGTTGCAGGCCTCTTTTGGAGTTTCATCCCCGGGAAGGATGTCGCCGAGAAGCACTGAGCCACTATCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACATCTTCGGACTCTCAGTTCAAGGGAGCTGGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTGTCAGTTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTAGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGAAGGTCATCTTCTTTTGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTAGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTGCCCGGGATGGGCGCTGCGGCATCCGGTGAGGGTCTAACTACTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTTTAG | 2175 | 46.02 | MCGGPEQSNSASTTSASSPNPKDMNHLTVDCEDSFYSLLELASDNDTEGFKRLVESDLFSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNCKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNSHSNGSMDVSCLLLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFTDGFGNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRMLNDLNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANVFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQHLRTLSSRELGSNVPSSLIGSPVSSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVPGMGAAASGEGLTTTKSQLESTDHSVIGAWLEQMQLDQLVV | 724 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 22579385 | 22581559 | + | Lsi03G012060.1 | Lsi03g01206 | 658956 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01206 | 724 | SMART | ANK_2a | 80 | 110 | IPR002110 | GO:0005515 | |
Lsi03g01206 | 724 | SMART | ANK_2a | 115 | 147 | IPR002110 | GO:0005515 | |
Lsi03g01206 | 724 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lsi03g01206 | 724 | PANTHER | UNKEMPT FAMILY MEMBER | 17 | 722 | IPR045234 | - | |
Lsi03g01206 | 724 | Gene3D | - | 297 | 360 | - | - | |
Lsi03g01206 | 724 | ProSiteProfiles | Ankyrin repeat profile. | 115 | 150 | IPR002110 | GO:0005515 | |
Lsi03g01206 | 724 | MobiDBLite | consensus disorder prediction | 201 | 229 | - | - | |
Lsi03g01206 | 724 | ProSiteProfiles | Ankyrin repeat region circular profile. | 115 | 149 | - | - | |
Lsi03g01206 | 724 | MobiDBLite | consensus disorder prediction | 201 | 241 | - | - | |
Lsi03g01206 | 724 | Gene3D | - | 6 | 209 | IPR036770 | - | |
Lsi03g01206 | 724 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 324 | IPR000571 | GO:0046872 | |
Lsi03g01206 | 724 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Lsi03g01206 | 724 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 302 | 322 | IPR000571 | GO:0046872 | |
Lsi03g01206 | 724 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 | 17 | 722 | - | - | |
Lsi03g01206 | 724 | Pfam | Ankyrin repeats (3 copies) | 67 | 149 | IPR002110 | GO:0005515 | |
Lsi03g01206 | 724 | MobiDBLite | consensus disorder prediction | 401 | 423 | - | - | |
Lsi03g01206 | 724 | SUPERFAMILY | Ankyrin repeat | 40 | 159 | IPR036770 | - | |
Lsi03g01206 | 724 | SMART | c3hfinal6 | 332 | 355 | IPR000571 | GO:0046872 | |
Lsi03g01206 | 724 | SMART | c3hfinal6 | 297 | 323 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01206 | Lsi-Chr3:22579385 | Lsi03g01696 | Lsi-Chr3:28284647 | 0 | dispersed | |
Lsi03g01206 | Lsi-Chr3:22579385 | Lsi06g00248 | Lsi-Chr6:2788692 | 3.42E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25001 | PF12796 | Ank_2 | 1.10E-10 | CL0465 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01206 | - | - | csv:101205376 | 1321.99 |