Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01206 ATGTGTGGTGGTCCAGAACAATCTAATTCTGCATCGACTACATCGGCAAGCTCACCTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAACGATACAGAAGGCTTCAAACGTTTGGTGGAGTCTGATTTGTTTTCTCTTAACAAGTCTGGTCTCTGGTATGTTCGTCAAAAAGGATCAAAACAAGTTGTTCATGAGCATAGGACACCCCTGATGGTTGCAGCTACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCATTGTGCTACTTCCAGTGGATCTGTGAATGCGGTTGATATTGTCGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTGCAAGGATGTTAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTCGAGGAACTTCTTAATAGTCATTCAAATGGATCCATGGATGTGTCCTGTCTACTTTTGTCAATCAAAACGCCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCGTCTCCACCCAAGTCTATATCTTCTCCCAAATTTACTGATGGGTTTGGTAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATCAAGAACAGCATATATGCAACTGATGAGTTTCGCATGTTCTCTTTCAAGGTTAGACCTTGTTCACGGGCATATTCCCATGATTGGACCGAGTGTCCTTTTGTACACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGAAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTTTGTAAGGATGGCACCGGTTGCAATAGGCGGGTCTGCTTCTTTGCTCACACCAACGAAGAGCTAAGGCCACTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGATCAATTGGGTCTGCACCAACTGTAATGGATATGGCCACTGCATTGGGTCTTCTTCCTGGTTCCCCCTCATCAGTGTCTGCTTTATCTCCATCTCCATTTACTCAATCCATGTCTCCCTCTTCTAATGGTGTGTCTCACTCCTCTGTGAACTGGCAGCAGCCAAATGTGCCGACTCTTCACCTACCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTCTGAATGCCAGGGATATGCCTCTGGAGGATTTAAATGTCTTGCCAGACTTTGACAACCAGCCACGGATGTTGAACGATTTGAACTGTTTCTCTCAGCCTCGTCCGAGTGCCGTGTCTGTTAGTCGATCTGGCTGGACCCAAACTCTAACACCTAACAATCTTGAAGAGCTTTTTTCTTCTGAGATCTCTTCGTCTCCCAGATTCTCTGATCCAGCTGCCAATGTTTTTTCCCCTACCCGCAAATCAACTATGCTTAACCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCCATTAATACAAGCATTATGTCCCCTAAGAATGTTGATCATCATTTGTTGCAGGCCTCTTTTGGAGTTTCATCCCCGGGAAGGATGTCGCCGAGAAGCACTGAGCCACTATCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACATCTTCGGACTCTCAGTTCAAGGGAGCTGGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTGTCAGTTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTAGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGAAGGTCATCTTCTTTTGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTAGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTGCCCGGGATGGGCGCTGCGGCATCCGGTGAGGGTCTAACTACTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTTTAG 2175 46.02 MCGGPEQSNSASTTSASSPNPKDMNHLTVDCEDSFYSLLELASDNDTEGFKRLVESDLFSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNCKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNSHSNGSMDVSCLLLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFTDGFGNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRMLNDLNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANVFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQHLRTLSSRELGSNVPSSLIGSPVSSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVPGMGAAASGEGLTTTKSQLESTDHSVIGAWLEQMQLDQLVV 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22579385 22581559 + Lsi03G012060.1 Lsi03g01206 658956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01206 724 SMART ANK_2a 80 110 IPR002110 GO:0005515
Lsi03g01206 724 SMART ANK_2a 115 147 IPR002110 GO:0005515
Lsi03g01206 724 MobiDBLite consensus disorder prediction 1 25 - -
Lsi03g01206 724 PANTHER UNKEMPT FAMILY MEMBER 17 722 IPR045234 -
Lsi03g01206 724 Gene3D - 297 360 - -
Lsi03g01206 724 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515
Lsi03g01206 724 MobiDBLite consensus disorder prediction 201 229 - -
Lsi03g01206 724 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Lsi03g01206 724 MobiDBLite consensus disorder prediction 201 241 - -
Lsi03g01206 724 Gene3D - 6 209 IPR036770 -
Lsi03g01206 724 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Lsi03g01206 724 MobiDBLite consensus disorder prediction 1 24 - -
Lsi03g01206 724 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Lsi03g01206 724 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 17 722 - -
Lsi03g01206 724 Pfam Ankyrin repeats (3 copies) 67 149 IPR002110 GO:0005515
Lsi03g01206 724 MobiDBLite consensus disorder prediction 401 423 - -
Lsi03g01206 724 SUPERFAMILY Ankyrin repeat 40 159 IPR036770 -
Lsi03g01206 724 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Lsi03g01206 724 SMART c3hfinal6 297 323 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01206 Lsi-Chr3:22579385 Lsi03g01696 Lsi-Chr3:28284647 0 dispersed
Lsi03g01206 Lsi-Chr3:22579385 Lsi06g00248 Lsi-Chr6:2788692 3.42E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25001 PF12796 Ank_2 1.10E-10 CL0465 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01206 - - csv:101205376 1321.99