Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01210 ATGATAGAGACAGTGGCGGCAAAATACTCCCAAGAAAATGCCTTGAACACTGGTCTTTCACTCCATAGCTGCGAAGTTTCTTTCAAAGCAACTCTTCATCTTCCCCTCCATTTTCCTAACGCCCCAATGCGGAAGAAGCGTCGAGTTCCAGAGGTTCTATGGCGCCTCTTCTCCCATCGTGCTCGAACGCTTGCCGAAACCATCACCTCCTTACTTCCTCCGCCCGATTGCCGCTGCCACAGCCGGCGTTGTCTCCGCTGCACCGGTGCAACTCCGGACGATTTTCTTCTCAGACCAGACGATCCTCCTGCTTATCGAGAGCTTTTGACTCAGTGTTACGTTGTTGTCTCTGAGAAGGCGTCTCCCCGCTCTGATTTTTCAAATGAATCGCGCTGGTCTCAGCATCGGATTGTGGTGAAGACTATCGAAACAATAATCGGTACACAGCCGGTTGAGAGCAATTTAATTTGCTGTGGTTTTAATAAGTTGACCCAGTCAAGTCCAATTGTTGATCTTTTAACTTGTCCAGCCTGGGATCTTCTCTTAAGCAGGGTTAGGGATGATATGATGGTTTATCTGCTAATGAATACTTCAATATTCTTGCCCCTACCACAGAAGAGGCACCATCAGGTGGCAGGTCTTCCCATCAATAATTTGTGCAATAAGTCGTCAGAATGTTCTGCTGGTTCCTCAAATCAACGACTGGAGAAGAAGAGGAAAAGAGATGGTGATCAACCTAGTGGTTCCTTCAGTGATCCTTGCCCTCCTTTTCACGCCAGATATTTTTCTGGGTGCGAAAATAGTTTTTTCCAATCATCATGCTGGCATCAAGAGGATAAACAGTTTCAATTGGGTTCAAAGAACATAATGAATCAATCAATCAGTATTCCTACTCTTGAAAATAATTCAAATAGGAAATCAGAAAAGTCAAGCCAGTCTGTTACGGAGCTTGGAAAGCGGTTAAGGCCATTTAGATGGCAACGGGAAAGAAAGCGTAGGCTATTAGATCCTGGGAATAATAATTCGGCCCCTTGCACGTCAATGTATTCTGGTAAGAATACCTTGCATGCGAAGCCTCCAAATCAGTTGAGTGACCAGTCATGCCACTCCCACAAGGAAGCTCGAAAGATTATAGAAGAGGTTTACATTAACAGGAAATCCATGTTTTACAACCTGGACTGTTCAGCAATTGTTCTGAAAAGAAATATACTTGGTTCTTTGAAGCCAAACTTTGCTGGTTCAGAGAGTCTTGCTAGATATATCTTTGGTTCATGTGATGCAAATGGAAATACTCCTTCCTCATTACTCTTCTGCAACAGTAGCACCTGTCCATTTGGATCAAAATGCCTATATCATTCACTTACCAAATTGCTCAAAGCTCTGATACGTAGAAGCCGTAATTGTCAATACATTAGATTGTTGGATAAGCACTGTGTTGTCCCATCATTAGAACAAATATCCATTGGAAATTCAGGCTCCACGTTTGAGTGTCACAGAAGTGAGTTCAATACGGAAATTGGTGAAGACACCCGTGGTTCTGATGTCAAACAAAGCAAGAATTATCCAGAAACAATTGATCCTCAATTTGCAGCTAAGTTCTATTGCCCTAAAAGTCAGGTGGTCTCATTCATATGGGCTGTTTGTCGGAGCATAGTTCCTCCAGATATGCTGGGTACCTGTTCTAATTGGAGAATATTAAGGAGAAATATTTCCAAGTTTATAAAATTACGAAGATTTGAAAACTTTTCCTTGAAGCAAGCTGTGCATAAATTGAAAACCTCACGGTTTCCATTTTTATTAGATAAACATTCTTCATGTTGTCAGAATGGTAAGGTGTCAAACTCTGTGGAGCAGAGGAAGGTTATGCCAAAGGAAGCAGCATATGTGATGAAACGCAATCTTACCGAAAGTTGGATTTATTGGTTATTTTCACATTTGATTGTACCATTGATACAAGCACACTTCTACGTTACTGAAACTGAATTTGGGAGCCAAGATGTTTATTTTTTCCGGAAGTCAATATGGGAGAAGTTAACAAAGGGTGCCACCAATAGCTTTAAAGAAAAAGGTTATTGTAACTTGAACGACTCAGCTGTCAGAGGTATCCTGGCAAAGAGATCATTTGGTTTCTCAAAAGTTAGGCTTTGTCCAAAAGAAAATGGAGTAAGGATTCTGGCAAATCTCAAGGCATATTCAAGAATGCCAACAGAAAATGGTGAATCTCGTGGAGTGTGTGGAAAGAAAAAGCCTTTCAAGTTTAATTACTACAAGTCTGTGAACAATGTTCTTAGAGATACTCACGCTGTTTTGAAAGGTATTAAGTTAAAAGAACCAGAGCTATTGGGATCATCAGTATTTGATTACAATGATGTCTATCGAAAGTTTCGTATACTTTTACCTAGCCTGAAGAAGGCTAAGGCTTCCATGCCTGACTTTTTCCTTGTTGTTTCTGATGTATCAAATGCATTTGATTCTGTTGATCAAGATAAGCTGCTTGATGTGATGAAAACCATTATTGTGAAAGATGAGTATCATCTTAAACAATACCATCACATTTTATGCACAAAGAAGACTATGTGGGCTCGTGAGAATGTAATGATGATTGATCCAAATATCAGTCCGAGATTTTCTTCTCCACAATTTCGTTCCTTGCATAGTGTCCTTGTTAATCAGGAATGGAGCAGCGCCGTAAACAAGGAAAACCTCTTTTATCTCCTACACGAGCACGTGAAGCGAAATGTCATGCAATTTGATAAAAAGTTTTACTTGCAAAGAACAGGTATTGCTCAAGGAAGTGTTTTGTCATCTATGCTCTGCTCATTATACTTTGGAGATTTAGAGAGGAAGGTGCTTTTTCCATTTCTTGGAAAAGTTATTGAATCTAGGGCTAACGAAATAACTGTGAGACAAAATTGTCTTGGCCCTTCTATTTCCCCGAGTAGCAATGAGGATGAAATGATAACAAATCCTGGTTATAAGCTGCTTAGATTTATTGATGATTTCCTTTTCATATCGACCTCGAAGCAGCTGGCAGAAGAATTCTTATCCAGAATTTACAGAGGATTCCGAGCATATAATTGCTACATGAATGAAAGAAAGTTTGGTCTGAACTTTGATGTACTATATACATCTAGACTCGTCTCCAAAAGAGTCTATGTTGGTAAAGATGGTGTTTCATTTCTTCAATGGAGTGGTTTGCTCATCAACTGTCAGTCTCTTGAAATTCAGGCAGACTACACAAAGTATTTGAATAACCACTTAAATTCAAGACTAACTGTTTGCTGGCAACGCAAACCTGGACATCATCTGAAGGAAAAGTTGTGTGATTATTTAAGGCCCAAATGTCATCCAATCTTTTTTGATATGAATATCAATACTGCTGCAGTTGTGAGATTAAACATTTTTCAAGCATTTCTAATATGTGCAATGAAGTTCCATTGCTACATATGCCATTTATCATATATGTGCAAATTCAGCAGAAATTTTCTCTTGAAGGTCATTCTAAGATCTCTAAGGTACATGGATGTGCTCATAAAGAATAAGATGTCTTCGATTCAACTCGATTCGCTTCCACGTCCAAGTCTGCAGCTAGAGGATGGAGAAGTTGAATGGCTAGGACTAAATGCTTATGTTCAAGTGTTGACAAGGAAACAGGCACGACATACTCGGTTACTGTCATCGTTGAAATCGAGGTTATTGGCTCATCGATTGTCGGGGTGCATCTCTTCGGATCTGATCTATGCTGTTGATTGCTCGCATTCATCCATACTCTGGAAAATCAAAATACCCGATGTATTGAAACTTGTAATTCATAAGTCTCCTTGCCGAAACAACAGTTCTCACTTTTCTGTCTTTGCAACTCGAAACTCGAATCGAAACTTCTGCTCTCTCCTCAACCTGCAACGCCCCAACCCCGCGTTTGACAAATTAGGGTTTCTCTGTAGAGAAATGGCGTTGGCCAGTCGCATCAGATCCACCATTCCTGTCCTCAGCAAGTTTTTGAGATCCGAATCCTCCTGCACTCCGCTCTCAAGGACGTATGCCGCTACATCAGGGAAAAATGAAAGAAAAGTGAAGGTGCCTATTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTCTCTATATAGCTGCAGTAAAAGCTAATTCTTTAGAAAAGGTGGAGTCTGAGCTTGTTAACCTTGTCGAGGCTATTAAGAAAAGCCCTACATTTTCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAAACTAGAGTTAAGGCTATCAATGAAATTTCTGCTGAAGCTAAATTTTCAGACGTTGGAAAGAACTTTTTGGTTGTGCTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACCATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTGTAAAAACCAGATTCTTATGTACAAAGTTCAACCTTATTGATATTGGCAATTTGTTGATCATGGATGAAAAGCCTATTCCAGCACAAGAAGAGAAAGAATTGAAGGAGACATTGCAAGATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATTCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCCATTAAAACCCGGGCACGTCAAATGGAGAGGTTCTTGCGCCAACCTGTAACTCTTGATGCATTTCTTGGGGTCTCAGATGCAGAAGAGGGGGAAAAAAAGTACCAGATGTTGGAAGAGCACAGCAATATTATAAAGATTTTCCTCGATAAATTTGGGGTGTTGAAGGCCCCACTTCTTGCCATATGCTTGCTTTTATGA 4854 40.44 MIETVAAKYSQENALNTGLSLHSCEVSFKATLHLPLHFPNAPMRKKRRVPEVLWRLFSHRARTLAETITSLLPPPDCRCHSRRCLRCTGATPDDFLLRPDDPPAYRELLTQCYVVVSEKASPRSDFSNESRWSQHRIVVKTIETIIGTQPVESNLICCGFNKLTQSSPIVDLLTCPAWDLLLSRVRDDMMVYLLMNTSIFLPLPQKRHHQVAGLPINNLCNKSSECSAGSSNQRLEKKRKRDGDQPSGSFSDPCPPFHARYFSGCENSFFQSSCWHQEDKQFQLGSKNIMNQSISIPTLENNSNRKSEKSSQSVTELGKRLRPFRWQRERKRRLLDPGNNNSAPCTSMYSGKNTLHAKPPNQLSDQSCHSHKEARKIIEEVYINRKSMFYNLDCSAIVLKRNILGSLKPNFAGSESLARYIFGSCDANGNTPSSLLFCNSSTCPFGSKCLYHSLTKLLKALIRRSRNCQYIRLLDKHCVVPSLEQISIGNSGSTFECHRSEFNTEIGEDTRGSDVKQSKNYPETIDPQFAAKFYCPKSQVVSFIWAVCRSIVPPDMLGTCSNWRILRRNISKFIKLRRFENFSLKQAVHKLKTSRFPFLLDKHSSCCQNGKVSNSVEQRKVMPKEAAYVMKRNLTESWIYWLFSHLIVPLIQAHFYVTETEFGSQDVYFFRKSIWEKLTKGATNSFKEKGYCNLNDSAVRGILAKRSFGFSKVRLCPKENGVRILANLKAYSRMPTENGESRGVCGKKKPFKFNYYKSVNNVLRDTHAVLKGIKLKEPELLGSSVFDYNDVYRKFRILLPSLKKAKASMPDFFLVVSDVSNAFDSVDQDKLLDVMKTIIVKDEYHLKQYHHILCTKKTMWARENVMMIDPNISPRFSSPQFRSLHSVLVNQEWSSAVNKENLFYLLHEHVKRNVMQFDKKFYLQRTGIAQGSVLSSMLCSLYFGDLERKVLFPFLGKVIESRANEITVRQNCLGPSISPSSNEDEMITNPGYKLLRFIDDFLFISTSKQLAEEFLSRIYRGFRAYNCYMNERKFGLNFDVLYTSRLVSKRVYVGKDGVSFLQWSGLLINCQSLEIQADYTKYLNNHLNSRLTVCWQRKPGHHLKEKLCDYLRPKCHPIFFDMNINTAAVVRLNIFQAFLICAMKFHCYICHLSYMCKFSRNFLLKVILRSLRYMDVLIKNKMSSIQLDSLPRPSLQLEDGEVEWLGLNAYVQVLTRKQARHTRLLSSLKSRLLAHRLSGCISSDLIYAVDCSHSSILWKIKIPDVLKLVIHKSPCRNNSSHFSVFATRNSNRNFCSLLNLQRPNPAFDKLGFLCREMALASRIRSTIPVLSKFLRSESSCTPLSRTYAATSGKNERKVKVPIALFGGSGNYASALYIAAVKANSLEKVESELVNLVEAIKKSPTFSQFTMDLSVPAETRVKAINEISAEAKFSDVGKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIVKTRFLCTKFNLIDIGNLLIMDEKPIPAQEEKELKETLQDIIGQGKKVKLEQKIDSSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVTLDAFLGVSDAEEGEKKYQMLEEHSNIIKIFLDKFGVLKAPLLAICLLL 1617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22634209 22653108 - Lsi03G012100.1 Lsi03g01210 658960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01210 1617 PRINTS Telomere reverse transcriptase signature 922 938 IPR003545 GO:0003677|GO:0003721
Lsi03g01210 1617 PRINTS Telomere reverse transcriptase signature 655 669 IPR003545 GO:0003677|GO:0003721
Lsi03g01210 1617 PRINTS Telomere reverse transcriptase signature 810 826 IPR003545 GO:0003677|GO:0003721
Lsi03g01210 1617 Gene3D - 1085 1247 - -
Lsi03g01210 1617 MobiDBLite consensus disorder prediction 296 321 - -
Lsi03g01210 1617 Gene3D - 1368 1460 IPR026015 -
Lsi03g01210 1617 CDD TERT 917 1069 - -
Lsi03g01210 1617 Pfam Telomerase ribonucleoprotein complex - RNA binding domain 539 685 IPR021891 GO:0003964
Lsi03g01210 1617 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 1526 1545 IPR020781 GO:0015986|GO:0016020|GO:0046933
Lsi03g01210 1617 Pfam ATP synthase delta (OSCP) subunit 1369 1477 IPR000711 GO:0015986|GO:0046933
Lsi03g01210 1617 Pfam ATP synthase delta (OSCP) subunit 1502 1562 IPR000711 GO:0015986|GO:0046933
Lsi03g01210 1617 PANTHER TELOMERASE REVERSE TRANSCRIPTASE 45 1261 IPR003545 GO:0003677|GO:0003721
Lsi03g01210 1617 SMART Telomerase_RBD_2 538 688 IPR021891 GO:0003964
Lsi03g01210 1617 MobiDBLite consensus disorder prediction 225 252 - -
Lsi03g01210 1617 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 1368 1469 IPR026015 -
Lsi03g01210 1617 MobiDBLite consensus disorder prediction 232 246 - -
Lsi03g01210 1617 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 697 1068 IPR000477 -
Lsi03g01210 1617 Gene3D - 390 697 - -
Lsi03g01210 1617 Hamap ATP synthase subunit delta [atpD]. 1363 1566 IPR000711 GO:0015986|GO:0046933
Lsi03g01210 1617 MobiDBLite consensus disorder prediction 296 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02578 Lsi-Chr2:32238544 Lsi03g01210 Lsi-Chr3:22634209 6.25E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01210 K11126 - csv:101209644 1996.86