Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01210 | ATGATAGAGACAGTGGCGGCAAAATACTCCCAAGAAAATGCCTTGAACACTGGTCTTTCACTCCATAGCTGCGAAGTTTCTTTCAAAGCAACTCTTCATCTTCCCCTCCATTTTCCTAACGCCCCAATGCGGAAGAAGCGTCGAGTTCCAGAGGTTCTATGGCGCCTCTTCTCCCATCGTGCTCGAACGCTTGCCGAAACCATCACCTCCTTACTTCCTCCGCCCGATTGCCGCTGCCACAGCCGGCGTTGTCTCCGCTGCACCGGTGCAACTCCGGACGATTTTCTTCTCAGACCAGACGATCCTCCTGCTTATCGAGAGCTTTTGACTCAGTGTTACGTTGTTGTCTCTGAGAAGGCGTCTCCCCGCTCTGATTTTTCAAATGAATCGCGCTGGTCTCAGCATCGGATTGTGGTGAAGACTATCGAAACAATAATCGGTACACAGCCGGTTGAGAGCAATTTAATTTGCTGTGGTTTTAATAAGTTGACCCAGTCAAGTCCAATTGTTGATCTTTTAACTTGTCCAGCCTGGGATCTTCTCTTAAGCAGGGTTAGGGATGATATGATGGTTTATCTGCTAATGAATACTTCAATATTCTTGCCCCTACCACAGAAGAGGCACCATCAGGTGGCAGGTCTTCCCATCAATAATTTGTGCAATAAGTCGTCAGAATGTTCTGCTGGTTCCTCAAATCAACGACTGGAGAAGAAGAGGAAAAGAGATGGTGATCAACCTAGTGGTTCCTTCAGTGATCCTTGCCCTCCTTTTCACGCCAGATATTTTTCTGGGTGCGAAAATAGTTTTTTCCAATCATCATGCTGGCATCAAGAGGATAAACAGTTTCAATTGGGTTCAAAGAACATAATGAATCAATCAATCAGTATTCCTACTCTTGAAAATAATTCAAATAGGAAATCAGAAAAGTCAAGCCAGTCTGTTACGGAGCTTGGAAAGCGGTTAAGGCCATTTAGATGGCAACGGGAAAGAAAGCGTAGGCTATTAGATCCTGGGAATAATAATTCGGCCCCTTGCACGTCAATGTATTCTGGTAAGAATACCTTGCATGCGAAGCCTCCAAATCAGTTGAGTGACCAGTCATGCCACTCCCACAAGGAAGCTCGAAAGATTATAGAAGAGGTTTACATTAACAGGAAATCCATGTTTTACAACCTGGACTGTTCAGCAATTGTTCTGAAAAGAAATATACTTGGTTCTTTGAAGCCAAACTTTGCTGGTTCAGAGAGTCTTGCTAGATATATCTTTGGTTCATGTGATGCAAATGGAAATACTCCTTCCTCATTACTCTTCTGCAACAGTAGCACCTGTCCATTTGGATCAAAATGCCTATATCATTCACTTACCAAATTGCTCAAAGCTCTGATACGTAGAAGCCGTAATTGTCAATACATTAGATTGTTGGATAAGCACTGTGTTGTCCCATCATTAGAACAAATATCCATTGGAAATTCAGGCTCCACGTTTGAGTGTCACAGAAGTGAGTTCAATACGGAAATTGGTGAAGACACCCGTGGTTCTGATGTCAAACAAAGCAAGAATTATCCAGAAACAATTGATCCTCAATTTGCAGCTAAGTTCTATTGCCCTAAAAGTCAGGTGGTCTCATTCATATGGGCTGTTTGTCGGAGCATAGTTCCTCCAGATATGCTGGGTACCTGTTCTAATTGGAGAATATTAAGGAGAAATATTTCCAAGTTTATAAAATTACGAAGATTTGAAAACTTTTCCTTGAAGCAAGCTGTGCATAAATTGAAAACCTCACGGTTTCCATTTTTATTAGATAAACATTCTTCATGTTGTCAGAATGGTAAGGTGTCAAACTCTGTGGAGCAGAGGAAGGTTATGCCAAAGGAAGCAGCATATGTGATGAAACGCAATCTTACCGAAAGTTGGATTTATTGGTTATTTTCACATTTGATTGTACCATTGATACAAGCACACTTCTACGTTACTGAAACTGAATTTGGGAGCCAAGATGTTTATTTTTTCCGGAAGTCAATATGGGAGAAGTTAACAAAGGGTGCCACCAATAGCTTTAAAGAAAAAGGTTATTGTAACTTGAACGACTCAGCTGTCAGAGGTATCCTGGCAAAGAGATCATTTGGTTTCTCAAAAGTTAGGCTTTGTCCAAAAGAAAATGGAGTAAGGATTCTGGCAAATCTCAAGGCATATTCAAGAATGCCAACAGAAAATGGTGAATCTCGTGGAGTGTGTGGAAAGAAAAAGCCTTTCAAGTTTAATTACTACAAGTCTGTGAACAATGTTCTTAGAGATACTCACGCTGTTTTGAAAGGTATTAAGTTAAAAGAACCAGAGCTATTGGGATCATCAGTATTTGATTACAATGATGTCTATCGAAAGTTTCGTATACTTTTACCTAGCCTGAAGAAGGCTAAGGCTTCCATGCCTGACTTTTTCCTTGTTGTTTCTGATGTATCAAATGCATTTGATTCTGTTGATCAAGATAAGCTGCTTGATGTGATGAAAACCATTATTGTGAAAGATGAGTATCATCTTAAACAATACCATCACATTTTATGCACAAAGAAGACTATGTGGGCTCGTGAGAATGTAATGATGATTGATCCAAATATCAGTCCGAGATTTTCTTCTCCACAATTTCGTTCCTTGCATAGTGTCCTTGTTAATCAGGAATGGAGCAGCGCCGTAAACAAGGAAAACCTCTTTTATCTCCTACACGAGCACGTGAAGCGAAATGTCATGCAATTTGATAAAAAGTTTTACTTGCAAAGAACAGGTATTGCTCAAGGAAGTGTTTTGTCATCTATGCTCTGCTCATTATACTTTGGAGATTTAGAGAGGAAGGTGCTTTTTCCATTTCTTGGAAAAGTTATTGAATCTAGGGCTAACGAAATAACTGTGAGACAAAATTGTCTTGGCCCTTCTATTTCCCCGAGTAGCAATGAGGATGAAATGATAACAAATCCTGGTTATAAGCTGCTTAGATTTATTGATGATTTCCTTTTCATATCGACCTCGAAGCAGCTGGCAGAAGAATTCTTATCCAGAATTTACAGAGGATTCCGAGCATATAATTGCTACATGAATGAAAGAAAGTTTGGTCTGAACTTTGATGTACTATATACATCTAGACTCGTCTCCAAAAGAGTCTATGTTGGTAAAGATGGTGTTTCATTTCTTCAATGGAGTGGTTTGCTCATCAACTGTCAGTCTCTTGAAATTCAGGCAGACTACACAAAGTATTTGAATAACCACTTAAATTCAAGACTAACTGTTTGCTGGCAACGCAAACCTGGACATCATCTGAAGGAAAAGTTGTGTGATTATTTAAGGCCCAAATGTCATCCAATCTTTTTTGATATGAATATCAATACTGCTGCAGTTGTGAGATTAAACATTTTTCAAGCATTTCTAATATGTGCAATGAAGTTCCATTGCTACATATGCCATTTATCATATATGTGCAAATTCAGCAGAAATTTTCTCTTGAAGGTCATTCTAAGATCTCTAAGGTACATGGATGTGCTCATAAAGAATAAGATGTCTTCGATTCAACTCGATTCGCTTCCACGTCCAAGTCTGCAGCTAGAGGATGGAGAAGTTGAATGGCTAGGACTAAATGCTTATGTTCAAGTGTTGACAAGGAAACAGGCACGACATACTCGGTTACTGTCATCGTTGAAATCGAGGTTATTGGCTCATCGATTGTCGGGGTGCATCTCTTCGGATCTGATCTATGCTGTTGATTGCTCGCATTCATCCATACTCTGGAAAATCAAAATACCCGATGTATTGAAACTTGTAATTCATAAGTCTCCTTGCCGAAACAACAGTTCTCACTTTTCTGTCTTTGCAACTCGAAACTCGAATCGAAACTTCTGCTCTCTCCTCAACCTGCAACGCCCCAACCCCGCGTTTGACAAATTAGGGTTTCTCTGTAGAGAAATGGCGTTGGCCAGTCGCATCAGATCCACCATTCCTGTCCTCAGCAAGTTTTTGAGATCCGAATCCTCCTGCACTCCGCTCTCAAGGACGTATGCCGCTACATCAGGGAAAAATGAAAGAAAAGTGAAGGTGCCTATTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTCTCTATATAGCTGCAGTAAAAGCTAATTCTTTAGAAAAGGTGGAGTCTGAGCTTGTTAACCTTGTCGAGGCTATTAAGAAAAGCCCTACATTTTCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAAACTAGAGTTAAGGCTATCAATGAAATTTCTGCTGAAGCTAAATTTTCAGACGTTGGAAAGAACTTTTTGGTTGTGCTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACCATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTGTAAAAACCAGATTCTTATGTACAAAGTTCAACCTTATTGATATTGGCAATTTGTTGATCATGGATGAAAAGCCTATTCCAGCACAAGAAGAGAAAGAATTGAAGGAGACATTGCAAGATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATTCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCCATTAAAACCCGGGCACGTCAAATGGAGAGGTTCTTGCGCCAACCTGTAACTCTTGATGCATTTCTTGGGGTCTCAGATGCAGAAGAGGGGGAAAAAAAGTACCAGATGTTGGAAGAGCACAGCAATATTATAAAGATTTTCCTCGATAAATTTGGGGTGTTGAAGGCCCCACTTCTTGCCATATGCTTGCTTTTATGA | 4854 | 40.44 | MIETVAAKYSQENALNTGLSLHSCEVSFKATLHLPLHFPNAPMRKKRRVPEVLWRLFSHRARTLAETITSLLPPPDCRCHSRRCLRCTGATPDDFLLRPDDPPAYRELLTQCYVVVSEKASPRSDFSNESRWSQHRIVVKTIETIIGTQPVESNLICCGFNKLTQSSPIVDLLTCPAWDLLLSRVRDDMMVYLLMNTSIFLPLPQKRHHQVAGLPINNLCNKSSECSAGSSNQRLEKKRKRDGDQPSGSFSDPCPPFHARYFSGCENSFFQSSCWHQEDKQFQLGSKNIMNQSISIPTLENNSNRKSEKSSQSVTELGKRLRPFRWQRERKRRLLDPGNNNSAPCTSMYSGKNTLHAKPPNQLSDQSCHSHKEARKIIEEVYINRKSMFYNLDCSAIVLKRNILGSLKPNFAGSESLARYIFGSCDANGNTPSSLLFCNSSTCPFGSKCLYHSLTKLLKALIRRSRNCQYIRLLDKHCVVPSLEQISIGNSGSTFECHRSEFNTEIGEDTRGSDVKQSKNYPETIDPQFAAKFYCPKSQVVSFIWAVCRSIVPPDMLGTCSNWRILRRNISKFIKLRRFENFSLKQAVHKLKTSRFPFLLDKHSSCCQNGKVSNSVEQRKVMPKEAAYVMKRNLTESWIYWLFSHLIVPLIQAHFYVTETEFGSQDVYFFRKSIWEKLTKGATNSFKEKGYCNLNDSAVRGILAKRSFGFSKVRLCPKENGVRILANLKAYSRMPTENGESRGVCGKKKPFKFNYYKSVNNVLRDTHAVLKGIKLKEPELLGSSVFDYNDVYRKFRILLPSLKKAKASMPDFFLVVSDVSNAFDSVDQDKLLDVMKTIIVKDEYHLKQYHHILCTKKTMWARENVMMIDPNISPRFSSPQFRSLHSVLVNQEWSSAVNKENLFYLLHEHVKRNVMQFDKKFYLQRTGIAQGSVLSSMLCSLYFGDLERKVLFPFLGKVIESRANEITVRQNCLGPSISPSSNEDEMITNPGYKLLRFIDDFLFISTSKQLAEEFLSRIYRGFRAYNCYMNERKFGLNFDVLYTSRLVSKRVYVGKDGVSFLQWSGLLINCQSLEIQADYTKYLNNHLNSRLTVCWQRKPGHHLKEKLCDYLRPKCHPIFFDMNINTAAVVRLNIFQAFLICAMKFHCYICHLSYMCKFSRNFLLKVILRSLRYMDVLIKNKMSSIQLDSLPRPSLQLEDGEVEWLGLNAYVQVLTRKQARHTRLLSSLKSRLLAHRLSGCISSDLIYAVDCSHSSILWKIKIPDVLKLVIHKSPCRNNSSHFSVFATRNSNRNFCSLLNLQRPNPAFDKLGFLCREMALASRIRSTIPVLSKFLRSESSCTPLSRTYAATSGKNERKVKVPIALFGGSGNYASALYIAAVKANSLEKVESELVNLVEAIKKSPTFSQFTMDLSVPAETRVKAINEISAEAKFSDVGKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIVKTRFLCTKFNLIDIGNLLIMDEKPIPAQEEKELKETLQDIIGQGKKVKLEQKIDSSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVTLDAFLGVSDAEEGEKKYQMLEEHSNIIKIFLDKFGVLKAPLLAICLLL | 1617 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 22634209 | 22653108 | - | Lsi03G012100.1 | Lsi03g01210 | 658960 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01210 | 1617 | PRINTS | Telomere reverse transcriptase signature | 922 | 938 | IPR003545 | GO:0003677|GO:0003721 | |
Lsi03g01210 | 1617 | PRINTS | Telomere reverse transcriptase signature | 655 | 669 | IPR003545 | GO:0003677|GO:0003721 | |
Lsi03g01210 | 1617 | PRINTS | Telomere reverse transcriptase signature | 810 | 826 | IPR003545 | GO:0003677|GO:0003721 | |
Lsi03g01210 | 1617 | Gene3D | - | 1085 | 1247 | - | - | |
Lsi03g01210 | 1617 | MobiDBLite | consensus disorder prediction | 296 | 321 | - | - | |
Lsi03g01210 | 1617 | Gene3D | - | 1368 | 1460 | IPR026015 | - | |
Lsi03g01210 | 1617 | CDD | TERT | 917 | 1069 | - | - | |
Lsi03g01210 | 1617 | Pfam | Telomerase ribonucleoprotein complex - RNA binding domain | 539 | 685 | IPR021891 | GO:0003964 | |
Lsi03g01210 | 1617 | ProSitePatterns | ATP synthase delta (OSCP) subunit signature. | 1526 | 1545 | IPR020781 | GO:0015986|GO:0016020|GO:0046933 | |
Lsi03g01210 | 1617 | Pfam | ATP synthase delta (OSCP) subunit | 1369 | 1477 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi03g01210 | 1617 | Pfam | ATP synthase delta (OSCP) subunit | 1502 | 1562 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi03g01210 | 1617 | PANTHER | TELOMERASE REVERSE TRANSCRIPTASE | 45 | 1261 | IPR003545 | GO:0003677|GO:0003721 | |
Lsi03g01210 | 1617 | SMART | Telomerase_RBD_2 | 538 | 688 | IPR021891 | GO:0003964 | |
Lsi03g01210 | 1617 | MobiDBLite | consensus disorder prediction | 225 | 252 | - | - | |
Lsi03g01210 | 1617 | SUPERFAMILY | N-terminal domain of the delta subunit of the F1F0-ATP synthase | 1368 | 1469 | IPR026015 | - | |
Lsi03g01210 | 1617 | MobiDBLite | consensus disorder prediction | 232 | 246 | - | - | |
Lsi03g01210 | 1617 | ProSiteProfiles | Reverse transcriptase (RT) catalytic domain profile. | 697 | 1068 | IPR000477 | - | |
Lsi03g01210 | 1617 | Gene3D | - | 390 | 697 | - | - | |
Lsi03g01210 | 1617 | Hamap | ATP synthase subunit delta [atpD]. | 1363 | 1566 | IPR000711 | GO:0015986|GO:0046933 | |
Lsi03g01210 | 1617 | MobiDBLite | consensus disorder prediction | 296 | 317 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02578 | Lsi-Chr2:32238544 | Lsi03g01210 | Lsi-Chr3:22634209 | 6.25E-103 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01210 | K11126 | - | csv:101209644 | 1996.86 |