Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01245 ATGGGTATTGAAACAGTTCAGAATGACGTCATTTTCCGGTCGAAACTACCGGACATCTACATCCCAAAGCATCTTCCTCTGCATTCCTACTGCCTACACGAAAACGCCGCCAAAATCGGCGACCGGACTTGTCTAATCAACGGCGTCACCGGCGAATCCTTCACCTACAACGACGTCGATCTCTCCGCTCGGAAAGTCGCTGCCGGATTAAACAAGATCGGCATTACAAAAGGCGATGTAATTATGCTCCTCCTCCCAAATTCGCCGGAATTCGTCTTCGCTTTCCTCGGCGCTTCATACCTCGGCGCAATTATGACGGCGGCGAATCCTTTCTTCACAGCAGCGGAAATCGCAAAGCAAGCAAAAGGATCAAAATCGAAATTAATCGTAACCCAATCGTCATATTACGAAAAAGTAAAGGAAATAACAGAGGAATTACCCGACGTTAAAATCATGACGGTCGATTCTCCACCAGAGGGTTGTTTATGGTTCGGCGATCTAATGAAAGCCGACGAAAAAGATATCCCGACGGTAGAAATCAATCCAGACGACGTGGTTGCGCTGCCGTATTCCTCTGGAACTACCGGATTACCGAAAGGAGTGATGCTTACACATAAAAGTTTGGTTACGAGTGTGGCTCAGCAAGTGGATGGAGAAAATCCGAATTTGTATTATGGAAATGAAGATGTGATTTTGTGTGTTTTGCCGTTGTTTCATATTTATTCGCTTAATTCTGTTTTGCTCTGTGGATTACGAGCCGGCACTGCGATTCTGATTATGCCGAAATTTGAGATCGGTTTGCTTTTGAAATTGGTGGAGAAATACAGAGTGTCGATTGCGCCGATTGTGCCGCCGATTGTTTTGGCTATTGCGAAGTCGCCGGACCTTGAGAAGTATGATCTTTCGTCGATCAGAGTGATCAAATGCGGCGGCGCTCCGCTTGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCTAAGGCTGTGCTTGGCCAGGTTAAAAGTAGAATGAGATACAAAATTAAAAGAGACGTAATGAAGATTCTTTTTAATTGGATTAAACTTAAAATTAATGTTCAGGCAAAAATATTTTTCGACGGATACGGAATGACGGAGGCGGGTCCAGTACTAACAATGGGATTAGCATTTGCAAAGGAGCCATTTCCGATGAAACCAGGCGCCTGCGGCACCGTCGTGAGAAACGCCGAGATGAAGATCGTCGACACGGAAACCGGCTGCTCATTGCCTCGAAACACGCCGGGAGAGATCTGCATCAGAGGCGATCAAATCATGAAAGGGTATCTGAACAATCCAGAGGCGACGGCGGCGACAATCGACAAGGACGGGTGGTTGCACACCGGCGACATCGGATTTATCGACGACGACGACGAGCTGTTCATCGTGGATCGGTTGAAGGAACTGATAAAGTACAAAGGATTTCAAGTGGCTCCGGCGGAACTGGAAGCTCTGTTGCTGACTCATCCGGTGATCTCTGATGCCGCCGTCGTACCAATGAAAGATGAACAAGCTGGAGAGGTTCCCGTTGCGTTCGTCGTGAAATTGAAGAATTCTGAAGTGGTTTTCTACAAGAGAATCAACCGGGTGTTTTTCATAGATGCAATTCCCAAATCGCCCTCGGGCAAGATCTTGAGGAAGGACTTGAGGGCAAAGTTGGCAGCTGCTTTTCCAAATTCTAATTAA 1704 46.95 MGIETVQNDVIFRSKLPDIYIPKHLPLHSYCLHENAAKIGDRTCLINGVTGESFTYNDVDLSARKVAAGLNKIGITKGDVIMLLLPNSPEFVFAFLGASYLGAIMTAANPFFTAAEIAKQAKGSKSKLIVTQSSYYEKVKEITEELPDVKIMTVDSPPEGCLWFGDLMKADEKDIPTVEINPDDVVALPYSSGTTGLPKGVMLTHKSLVTSVAQQVDGENPNLYYGNEDVILCVLPLFHIYSLNSVLLCGLRAGTAILIMPKFEIGLLLKLVEKYRVSIAPIVPPIVLAIAKSPDLEKYDLSSIRVIKCGGAPLGKELEDTVRAKFPKAVLGQVKSRMRYKIKRDVMKILFNWIKLKINVQAKIFFDGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTETGCSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAAFPNSN 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23048096 23053650 - Lsi03G012450.1 Lsi03g01245 658995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01245 567 Pfam AMP-binding enzyme C-terminal domain 487 549 IPR025110 -
Lsi03g01245 567 Gene3D - 474 562 IPR045851 -
Lsi03g01245 567 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 362 561 - -
Lsi03g01245 567 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 334 - -
Lsi03g01245 567 Pfam AMP-binding enzyme 33 330 IPR000873 -
Lsi03g01245 567 Pfam AMP-binding enzyme 364 478 IPR000873 -
Lsi03g01245 567 SUPERFAMILY Acetyl-CoA synthetase-like 16 559 - -
Lsi03g01245 567 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 362 561 - -
Lsi03g01245 567 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 334 - -
Lsi03g01245 567 Gene3D - 3 335 IPR042099 -
Lsi03g01245 567 Gene3D - 342 473 IPR042099 -
Lsi03g01245 567 CDD 4CL 21 555 - -
Lsi03g01245 567 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02637 Lsi-Chr2:32793313 Lsi03g01245 Lsi-Chr3:23048096 0 dispersed
Lsi03g01245 Lsi-Chr3:23048096 Lsi11g00723 Lsi-Chr11:7842942 0 dispersed
Lsi02g02635 Lsi-Chr2:32778201 Lsi03g01245 Lsi-Chr3:23048096 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01245 K01904 - csv:101215427 956.051