Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01252 ATGGAGAAGAAGACTTATCCGATTGGTGAAGATTTTTATATTCTGTATGAGGAAGTTGGGCAGGGTGTGAGCGCTTCAGTTCACCGTGCTCTCTGTAAACCTCTTAACGAGATCGTCGCCATTAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCGAATGTCCTTAAATCACACTGCTCCTTTGTCAATGGCCATGATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCCTATCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAATATTGCGAGATGTATTGAAGGGGGTTGAATATCTTCATAATCATGGACATATACATCGGGATATCAAAGCAGGGAATATTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCAGGGCTTGATTATGAGAGGGATAAAAAATTTTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTCAAAGATCCTTCGAAACGGCCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAGGCAAGCCCGATCAAATGATTACATTGCACGCACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTCAAGAGAAAGGAAGAAGATATGCTAGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAACGAATATAAACGAGGCATCAGTGGGTGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAGTCGATAAGTGAAATCAGTGAAGTAGGGAGCTCAAATTCCTTATGTGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTCAGATATTGAAGAGAATGGCATGCTGCGGAGACAACCCTCCATGAAAGCAAATGACCCAGTTTATGAGACAGAAAAGAATGGTGCAAATGGCAGTCTTGCAATTGGAATGACTTCTCAGGTGGTAGATGATGTACTTTCTGTTTCTCATTCTAAAGATCCCAAGTCATCATGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACCTCGGAGAGTGTTGACATAGAAAAGGTGATTACCTCAAATTCTGCTACTCCTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCCTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCTCAATCGGAGAGTTTTCAGCTGATGGCGTAGTTGATGTCTCAGCGGCACATATAACAGCAACGGAGAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTTAACGAAGTAACTGAGTTACAGTGGAGGAAGAAGAAATGTAAGGCAGTAAAGGATGATATGATGATAGAAGGTAACCTTACAAGTCATTTCCACTGTAGTATTGTTTTTCGGCTTGATATGGTTTTCTTCAGAGCTGTGTTCCTTCTCCTGTTTCAGTATCTGGTTTTGAATTCTGGGACTCCAGTTATTATAGGTCACCACTACCCTCCTCATAAGTCCTTGCTCACTGATAAAGCAGCCCTCCTTGCCTTCAGGAAGTGCATCATACATGACCCCACTCCCACTCTAGCTAACTGGATTGAGGCTGTTGATGTATGCAACTTCACTGGTGTTGCTTGTGACCGACACCGTCATCGGGTATCGAAGATCAGTTTGATTGGTGTTGGACTTGTGGGAAAGATTCCACCCTTCCTCTCCAATCTCACGGGTCTTCGAATTCTGGAAATTGTTAACAATTATCTTTTTGGGGAAATTCCTTCTGAACTTTTTTCTCTTCGAAATCTTCACCGCCTTCTCCTCGACAGCAACAGTTTGGAAGGTCCCATACCAACTTCCCTTGCTAGTTTGTCTAGGCTTACTGTTATAAGTCTTAGGGAGAACAAGCTAAATGGCAAAGTTCCTCCTTCTCTCTTTTCTAATTGCACGTCGTTGCTTAATGTAGACCTTTCCAACAACTTCCTAACAGGAAGAATTCCAGAAGAAATTGGAAATTGTCCAAAGCTGTGGAATCTCAATCTGTACAACAACCAGTTCAGTGGAGATCTTCCTCTTTCTTTAAGAAACACTTCGCTCTATAACTTGGATGTCGAATATAATCATCTTTCGGGCGAACTGCCTGCAGTGCTTGTAGAAAACCTGCCTTCACTTAGCTTCCTTCATTTATCAAATAATGATATGGTAAGCCACGATGGAAATACCAATCTTGAACCGTTCATTACTTCTCTTAGAAACTGCAGTAGTCTAGAGGAGCTTGAATTGGCTGGGATGGGGCTTGGAGGGAGGCTGCCCAATTCTATTGGTCATCTGGGTGTCAATTTTTCAGTTCTGTCTTTGCAGGAAAACCAGATATTTGGATCAATTCCTCCAAGTTTAGCCAAGCTTTCCAAACTTGCAGGGTTGAATTTGACATCAAATCTACTAAACGGAACAATTCCTGCAGAGATAAGCAGGTTGTCAAAATTGGAGCAGCTTTTCTTATCACACAACCTCTTCACTTCAGATATTCCAGAAGCATTAGGCGAGTTGCCACATCTTGGATTGTTGGATCTATCTCACAACCAACTTTCAGGAGAAATCCCAGAAAGTATTGGAAATCTGACTCAGATGAACTATTTGTTTCTCAACCACAACCTCTTGTCTGGAACAATACCTTCAGCATTGGTAAAGTGCACAGGTCTACAAAAGCTGGACTTATCTTTCAACATGTTATCAGGAAGCATTCCTCGAGAGATCTTAGGCTTGCAAGAGATAAGAATTTTTATCAACCTTTCTCATAATAATTTTCAAGGAAACTTGCCCATTGAGCTTAGTAAGCTGAAAAATGTTCAAGAGATGGACCTTTCATCCAATAACCTCACTGGAAGCATCTTCCCTCAGATATCAAGTTGCATTGCACTGAGGTTGATAAATTTTTCAAATAATTCCCTCCAAGGTCATCTTCCAGATTCCCTAGGTGAACTCGAGAACCTTGAATCATTTGACATTTCAAAAAACCAATTGTCAGGCATGATTCCAACCAGTCTAGGTAAGCTCCAATCTCTCACTTACCTGAATCTTTCATTCAATAACTTCCAAGGAATGATTCCAAGAGAGGGATTTTTCAAATCATCCACATCTCTGTCATTTTTGAACAATCCACTCCTTTGTGGGACAATTCCTGGAATACCAGCCTGTCCTGGCAAGAGAAATCGGTTTCAGTCACCTGTATTCTTGACTATATTCATTTTAATCATATGCATATCATCTTTCTTATCAACAATATGCTGTGGGATTGCTTGTCAACGTCTAAAAGCAATTATTTCAGCACGAAATAGTGAGTCATCGAGGAGATCAAAGATGCCAGATTTTATGCACAATTTTCCAAGAATAACAAGCAGGCAACTATCAGAAGCCACTGGAGGTTTTGATGAACAGAGACTTATTGGTTCGGGCAGCTATGGACAAGTCTATAGAGGCGTCCTTCCAGATGGAACAACAGTAGCTATTAAGGTTCTGCATACACAATCTGAAAATTCCACAAAGAGTTTTAACAGGGAATGCGAAGTTTTGAAGCGAATTCGCCACAGAAACCTTATCAGAATTATAACAGCTTGTAGTCTTCCGGATTTTAAAGCTCTAGTTCTACCATATATGGCAAATGGAAGCTTGGATAACCATCTATATCCACATTCACCTACCAGCTCGGCTCCAGGTTCTTCAGAATTAAACCTTATTGAGAGGGTGAATATATGCAGTGATATAGCGGAAGGAATGGCATACCTGCATCATCATTCTCCAGTCAGAGTCATACACTGTGATTTAAAGCCAAGCAATGTACTTCTAAAAGATGACATGACAGCCCTTGTTTCTGACTTTGGTATCTCAAGGTTAATGACCCCTGGAATGGGAAGCGGTGCAACTGTTGAAAACATGGGAAAGTCAACTGCAAACATGTTAACTGGATCAATTGGATATATTGCACCAGAATACGGATTTGGTTCTACAGCCTCCATGAAAGGAGACGTTTACAGCTTCGGCGTGCTAGTTCTAGAGATGGTAACAAGAAAAAGGCCAATAGACGACATGTTTGTTGAAGGGCTAAGTTTACATAAGTGGGTGAAGAGTCATTACTATGGCAGAGTAGAAAAAGTAGTGGATTATTCTCTACAGAGAGCTTCGAGAGATGAATCACCTGAAATGAAGAAAATGTGGGAAGTGGCAATCCGAGAGCTAATCGAATTGGGTTTGCTCTGCACTCAAGAATCTCCATCCACAAGACCCACAATGCTGGATGCTGCTGATGACTTGGATCGATTGAAGAGATACCTTAATGGTGGCGACACCACAACAACATTTGCTTCATCACTTGGAATTTCGTCCTCCACTCTTGGCGATGACTCCAATTACTCCCCACAAATCGCCGTTGACAGAAACATCTAA 4863 41.37 MEKKTYPIGEDFYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATILRDVLKGVEYLHNHGHIHRDIKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSNSLCALDVQEKKLQGQNSSEISDIEENGMLRRQPSMKANDPVYETEKNGANGSLAIGMTSQVVDDVLSVSHSKDPKSSCPATNDEEQDEKAKAPVIQQKGRFKVTSESVDIEKVITSNSATPLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQISIGEFSADGVVDVSAAHITATEKSLLEAAHEREKDLLNEVTELQWRKKKCKAVKDDMMIEGNLTSHFHCSIVFRLDMVFFRAVFLLLFQYLVLNSGTPVIIGHHYPPHKSLLTDKAALLAFRKCIIHDPTPTLANWIEAVDVCNFTGVACDRHRHRVSKISLIGVGLVGKIPPFLSNLTGLRILEIVNNYLFGEIPSELFSLRNLHRLLLDSNSLEGPIPTSLASLSRLTVISLRENKLNGKVPPSLFSNCTSLLNVDLSNNFLTGRIPEEIGNCPKLWNLNLYNNQFSGDLPLSLRNTSLYNLDVEYNHLSGELPAVLVENLPSLSFLHLSNNDMVSHDGNTNLEPFITSLRNCSSLEELELAGMGLGGRLPNSIGHLGVNFSVLSLQENQIFGSIPPSLAKLSKLAGLNLTSNLLNGTIPAEISRLSKLEQLFLSHNLFTSDIPEALGELPHLGLLDLSHNQLSGEIPESIGNLTQMNYLFLNHNLLSGTIPSALVKCTGLQKLDLSFNMLSGSIPREILGLQEIRIFINLSHNNFQGNLPIELSKLKNVQEMDLSSNNLTGSIFPQISSCIALRLINFSNNSLQGHLPDSLGELENLESFDISKNQLSGMIPTSLGKLQSLTYLNLSFNNFQGMIPREGFFKSSTSLSFLNNPLLCGTIPGIPACPGKRNRFQSPVFLTIFILIICISSFLSTICCGIACQRLKAIISARNSESSRRSKMPDFMHNFPRITSRQLSEATGGFDEQRLIGSGSYGQVYRGVLPDGTTVAIKVLHTQSENSTKSFNRECEVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDNHLYPHSPTSSAPGSSELNLIERVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLKDDMTALVSDFGISRLMTPGMGSGATVENMGKSTANMLTGSIGYIAPEYGFGSTASMKGDVYSFGVLVLEMVTRKRPIDDMFVEGLSLHKWVKSHYYGRVEKVVDYSLQRASRDESPEMKKMWEVAIRELIELGLLCTQESPSTRPTMLDAADDLDRLKRYLNGGDTTTTFASSLGISSSTLGDDSNYSPQIAVDRNI 1620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23117627 23136182 + Lsi03G012520.1 Lsi03g01252 659002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01252 1620 ProSitePatterns Protein kinases ATP-binding region signature. 1289 1311 IPR017441 GO:0005524
Lsi03g01252 1620 SUPERFAMILY Protein kinase-like (PK-like) 1258 1577 IPR011009 -
Lsi03g01252 1620 PANTHER OS06G0186100 PROTEIN 19 214 - -
Lsi03g01252 1620 PANTHER OS06G0186100 PROTEIN 640 1587 - -
Lsi03g01252 1620 SUPERFAMILY Protein kinase-like (PK-like) 12 275 IPR011009 -
Lsi03g01252 1620 SMART LRR_typ_2 1159 1183 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 1135 1158 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 764 788 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 990 1014 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 1038 1062 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 1087 1111 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 716 740 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 966 989 IPR003591 -
Lsi03g01252 1620 ProSiteProfiles Protein kinase domain profile. 1283 1584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 CDD STKc_IRAK 1289 1580 - -
Lsi03g01252 1620 Pfam Leucine rich repeat N-terminal domain 651 689 IPR013210 -
Lsi03g01252 1620 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lsi03g01252 1620 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 SUPERFAMILY L domain-like 941 1198 - -
Lsi03g01252 1620 Gene3D Phosphorylase Kinase; domain 1 1244 1358 - -
Lsi03g01252 1620 CDD STKc_OSR1_SPAK 13 274 - -
Lsi03g01252 1620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1410 1422 IPR008271 GO:0004672|GO:0006468
Lsi03g01252 1620 Gene3D Transferase(Phosphotransferase) domain 1 1359 1591 - -
Lsi03g01252 1620 MobiDBLite consensus disorder prediction 433 457 - -
Lsi03g01252 1620 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Lsi03g01252 1620 Coils Coil 564 584 - -
Lsi03g01252 1620 Pfam Protein kinase domain 1284 1573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 Pfam Protein kinase domain 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 Gene3D Ribonuclease Inhibitor 839 1214 IPR032675 -
Lsi03g01252 1620 MobiDBLite consensus disorder prediction 442 457 - -
Lsi03g01252 1620 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 SMART serkin_6 1283 1584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 Pfam Leucine rich repeat 765 826 IPR001611 GO:0005515
Lsi03g01252 1620 Pfam Leucine rich repeat 923 978 IPR001611 GO:0005515
Lsi03g01252 1620 Pfam Leucine rich repeat 991 1051 IPR001611 GO:0005515
Lsi03g01252 1620 Pfam Leucine rich repeat 1114 1172 IPR001611 GO:0005515
Lsi03g01252 1620 PANTHER OS04G0122200 PROTEIN 19 214 - -
Lsi03g01252 1620 PANTHER OS04G0122200 PROTEIN 640 1587 - -
Lsi03g01252 1620 Gene3D Transferase(Phosphotransferase) domain 1 94 326 - -
Lsi03g01252 1620 SUPERFAMILY L domain-like 651 875 - -
Lsi03g01252 1620 Gene3D Ribonuclease Inhibitor 651 763 IPR032675 -
Lsi03g01252 1620 Gene3D Ribonuclease Inhibitor 764 838 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01252 - - - csv:101211325 1858.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00993 Lsi-Chr2:10020777 Lsi03g01252 Lsi-Chr3:23117627 1.04E-32 dispersed
Lsi02g01568 Lsi-Chr2:21541017 Lsi03g01252 Lsi-Chr3:23117627 5.50E-13 dispersed
Lsi03g01252 Lsi-Chr3:23117627 Lsi06g01077 Lsi-Chr6:21026209 2.12E-11 dispersed
Lsi05g01693 Lsi-Chr5:24479118 Lsi03g01252 Lsi-Chr3:23117627 2.85E-11 dispersed
Lsi07g01113 Lsi-Chr7:16576131 Lsi03g01252 Lsi-Chr3:23117627 9.39E-14 dispersed
Lsi09g01255 Lsi-Chr9:20212599 Lsi03g01252 Lsi-Chr3:23117627 1.45E-39 dispersed
Lsi03g01252 Lsi-Chr3:23117627 Lsi03g00312 Lsi-Chr3:3768485 7.14E-10 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT1G53165 66.8 7.9e-199 690.6
Lsi04g01186 . 269 523 MAP Kinase Kinase Kinase Kinase AT1G53165 51.2 1.7e-60 231.1
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT3G15220 68.6 8.2e-204 707.2
Lsi04g01186 . 4 523 MAP Kinase Kinase Kinase Kinase AT1G69220 57.7 7.0e-138 488.4
Lsi04g01185 . 38 357 MAP Kinase Kinase Kinase Kinase AT1G69220 53.3 4.6e-81 299.7
Lsi04g02056 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 1.3e-67 255.0
Lsi02g01568 . 1 666 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.4e-245 845.9
Lsi05g01693 CCT 25 380 MAP Kinase Kinase Kinase Kinase AT5G14720 50.4 9.5e-96 348.2
Lsi07g01113 . 7 702 MAP Kinase Kinase Kinase Kinase AT4G24100 63.8 1.0e-236 816.6
Lsi07g01113 . 11 695 MAP Kinase Kinase Kinase Kinase AT4G10730 66.9 6.4e-249 857.1
Lsi03g01252 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 62.0 2.1e-131 466.5
Lsi07g01113 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.5 2.3e-117 419.9
Lsi03g01252 . 1 584 MAP Kinase Kinase Kinase Kinase AT1G79640 58.2 1.6e-201 699.5
Lsi02g01568 . 6 585 MAP Kinase Kinase Kinase Kinase AT1G79640 50.3 5.5e-157 551.6
Lsi02g01568 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.7e-103 371.7
Lsi03g01252 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.8e-87 318.5
Lsi07g01113 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 3.9e-75 279.3
Lsi05g01693 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.7 4.8e-142 501.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83488 PF00069 Pkinase 5.30E-42 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01252 Lsi_Chr03 FPKM 0.111111 0.193891 0.952943 1.155969 4.214977 1.210059 2.047604 1.102813 1.184619 1.659013