Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01252 ATGGAGAAGAAGACTTATCCGATTGGTGAAGATTTTTATATTCTGTATGAGGAAGTTGGGCAGGGTGTGAGCGCTTCAGTTCACCGTGCTCTCTGTAAACCTCTTAACGAGATCGTCGCCATTAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCGAATGTCCTTAAATCACACTGCTCCTTTGTCAATGGCCATGATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCCTATCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAATATTGCGAGATGTATTGAAGGGGGTTGAATATCTTCATAATCATGGACATATACATCGGGATATCAAAGCAGGGAATATTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCAGGGCTTGATTATGAGAGGGATAAAAAATTTTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTCAAAGATCCTTCGAAACGGCCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAGGCAAGCCCGATCAAATGATTACATTGCACGCACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTCAAGAGAAAGGAAGAAGATATGCTAGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAACGAATATAAACGAGGCATCAGTGGGTGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAGTCGATAAGTGAAATCAGTGAAGTAGGGAGCTCAAATTCCTTATGTGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTCAGATATTGAAGAGAATGGCATGCTGCGGAGACAACCCTCCATGAAAGCAAATGACCCAGTTTATGAGACAGAAAAGAATGGTGCAAATGGCAGTCTTGCAATTGGAATGACTTCTCAGGTGGTAGATGATGTACTTTCTGTTTCTCATTCTAAAGATCCCAAGTCATCATGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACCTCGGAGAGTGTTGACATAGAAAAGGTGATTACCTCAAATTCTGCTACTCCTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCCTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCTCAATCGGAGAGTTTTCAGCTGATGGCGTAGTTGATGTCTCAGCGGCACATATAACAGCAACGGAGAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTTAACGAAGTAACTGAGTTACAGTGGAGGAAGAAGAAATGTAAGGCAGTAAAGGATGATATGATGATAGAAGGTAACCTTACAAGTCATTTCCACTGTAGTATTGTTTTTCGGCTTGATATGGTTTTCTTCAGAGCTGTGTTCCTTCTCCTGTTTCAGTATCTGGTTTTGAATTCTGGGACTCCAGTTATTATAGGTCACCACTACCCTCCTCATAAGTCCTTGCTCACTGATAAAGCAGCCCTCCTTGCCTTCAGGAAGTGCATCATACATGACCCCACTCCCACTCTAGCTAACTGGATTGAGGCTGTTGATGTATGCAACTTCACTGGTGTTGCTTGTGACCGACACCGTCATCGGGTATCGAAGATCAGTTTGATTGGTGTTGGACTTGTGGGAAAGATTCCACCCTTCCTCTCCAATCTCACGGGTCTTCGAATTCTGGAAATTGTTAACAATTATCTTTTTGGGGAAATTCCTTCTGAACTTTTTTCTCTTCGAAATCTTCACCGCCTTCTCCTCGACAGCAACAGTTTGGAAGGTCCCATACCAACTTCCCTTGCTAGTTTGTCTAGGCTTACTGTTATAAGTCTTAGGGAGAACAAGCTAAATGGCAAAGTTCCTCCTTCTCTCTTTTCTAATTGCACGTCGTTGCTTAATGTAGACCTTTCCAACAACTTCCTAACAGGAAGAATTCCAGAAGAAATTGGAAATTGTCCAAAGCTGTGGAATCTCAATCTGTACAACAACCAGTTCAGTGGAGATCTTCCTCTTTCTTTAAGAAACACTTCGCTCTATAACTTGGATGTCGAATATAATCATCTTTCGGGCGAACTGCCTGCAGTGCTTGTAGAAAACCTGCCTTCACTTAGCTTCCTTCATTTATCAAATAATGATATGGTAAGCCACGATGGAAATACCAATCTTGAACCGTTCATTACTTCTCTTAGAAACTGCAGTAGTCTAGAGGAGCTTGAATTGGCTGGGATGGGGCTTGGAGGGAGGCTGCCCAATTCTATTGGTCATCTGGGTGTCAATTTTTCAGTTCTGTCTTTGCAGGAAAACCAGATATTTGGATCAATTCCTCCAAGTTTAGCCAAGCTTTCCAAACTTGCAGGGTTGAATTTGACATCAAATCTACTAAACGGAACAATTCCTGCAGAGATAAGCAGGTTGTCAAAATTGGAGCAGCTTTTCTTATCACACAACCTCTTCACTTCAGATATTCCAGAAGCATTAGGCGAGTTGCCACATCTTGGATTGTTGGATCTATCTCACAACCAACTTTCAGGAGAAATCCCAGAAAGTATTGGAAATCTGACTCAGATGAACTATTTGTTTCTCAACCACAACCTCTTGTCTGGAACAATACCTTCAGCATTGGTAAAGTGCACAGGTCTACAAAAGCTGGACTTATCTTTCAACATGTTATCAGGAAGCATTCCTCGAGAGATCTTAGGCTTGCAAGAGATAAGAATTTTTATCAACCTTTCTCATAATAATTTTCAAGGAAACTTGCCCATTGAGCTTAGTAAGCTGAAAAATGTTCAAGAGATGGACCTTTCATCCAATAACCTCACTGGAAGCATCTTCCCTCAGATATCAAGTTGCATTGCACTGAGGTTGATAAATTTTTCAAATAATTCCCTCCAAGGTCATCTTCCAGATTCCCTAGGTGAACTCGAGAACCTTGAATCATTTGACATTTCAAAAAACCAATTGTCAGGCATGATTCCAACCAGTCTAGGTAAGCTCCAATCTCTCACTTACCTGAATCTTTCATTCAATAACTTCCAAGGAATGATTCCAAGAGAGGGATTTTTCAAATCATCCACATCTCTGTCATTTTTGAACAATCCACTCCTTTGTGGGACAATTCCTGGAATACCAGCCTGTCCTGGCAAGAGAAATCGGTTTCAGTCACCTGTATTCTTGACTATATTCATTTTAATCATATGCATATCATCTTTCTTATCAACAATATGCTGTGGGATTGCTTGTCAACGTCTAAAAGCAATTATTTCAGCACGAAATAGTGAGTCATCGAGGAGATCAAAGATGCCAGATTTTATGCACAATTTTCCAAGAATAACAAGCAGGCAACTATCAGAAGCCACTGGAGGTTTTGATGAACAGAGACTTATTGGTTCGGGCAGCTATGGACAAGTCTATAGAGGCGTCCTTCCAGATGGAACAACAGTAGCTATTAAGGTTCTGCATACACAATCTGAAAATTCCACAAAGAGTTTTAACAGGGAATGCGAAGTTTTGAAGCGAATTCGCCACAGAAACCTTATCAGAATTATAACAGCTTGTAGTCTTCCGGATTTTAAAGCTCTAGTTCTACCATATATGGCAAATGGAAGCTTGGATAACCATCTATATCCACATTCACCTACCAGCTCGGCTCCAGGTTCTTCAGAATTAAACCTTATTGAGAGGGTGAATATATGCAGTGATATAGCGGAAGGAATGGCATACCTGCATCATCATTCTCCAGTCAGAGTCATACACTGTGATTTAAAGCCAAGCAATGTACTTCTAAAAGATGACATGACAGCCCTTGTTTCTGACTTTGGTATCTCAAGGTTAATGACCCCTGGAATGGGAAGCGGTGCAACTGTTGAAAACATGGGAAAGTCAACTGCAAACATGTTAACTGGATCAATTGGATATATTGCACCAGAATACGGATTTGGTTCTACAGCCTCCATGAAAGGAGACGTTTACAGCTTCGGCGTGCTAGTTCTAGAGATGGTAACAAGAAAAAGGCCAATAGACGACATGTTTGTTGAAGGGCTAAGTTTACATAAGTGGGTGAAGAGTCATTACTATGGCAGAGTAGAAAAAGTAGTGGATTATTCTCTACAGAGAGCTTCGAGAGATGAATCACCTGAAATGAAGAAAATGTGGGAAGTGGCAATCCGAGAGCTAATCGAATTGGGTTTGCTCTGCACTCAAGAATCTCCATCCACAAGACCCACAATGCTGGATGCTGCTGATGACTTGGATCGATTGAAGAGATACCTTAATGGTGGCGACACCACAACAACATTTGCTTCATCACTTGGAATTTCGTCCTCCACTCTTGGCGATGACTCCAATTACTCCCCACAAATCGCCGTTGACAGAAACATCTAA 4863 41.37 MEKKTYPIGEDFYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATILRDVLKGVEYLHNHGHIHRDIKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSNSLCALDVQEKKLQGQNSSEISDIEENGMLRRQPSMKANDPVYETEKNGANGSLAIGMTSQVVDDVLSVSHSKDPKSSCPATNDEEQDEKAKAPVIQQKGRFKVTSESVDIEKVITSNSATPLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQISIGEFSADGVVDVSAAHITATEKSLLEAAHEREKDLLNEVTELQWRKKKCKAVKDDMMIEGNLTSHFHCSIVFRLDMVFFRAVFLLLFQYLVLNSGTPVIIGHHYPPHKSLLTDKAALLAFRKCIIHDPTPTLANWIEAVDVCNFTGVACDRHRHRVSKISLIGVGLVGKIPPFLSNLTGLRILEIVNNYLFGEIPSELFSLRNLHRLLLDSNSLEGPIPTSLASLSRLTVISLRENKLNGKVPPSLFSNCTSLLNVDLSNNFLTGRIPEEIGNCPKLWNLNLYNNQFSGDLPLSLRNTSLYNLDVEYNHLSGELPAVLVENLPSLSFLHLSNNDMVSHDGNTNLEPFITSLRNCSSLEELELAGMGLGGRLPNSIGHLGVNFSVLSLQENQIFGSIPPSLAKLSKLAGLNLTSNLLNGTIPAEISRLSKLEQLFLSHNLFTSDIPEALGELPHLGLLDLSHNQLSGEIPESIGNLTQMNYLFLNHNLLSGTIPSALVKCTGLQKLDLSFNMLSGSIPREILGLQEIRIFINLSHNNFQGNLPIELSKLKNVQEMDLSSNNLTGSIFPQISSCIALRLINFSNNSLQGHLPDSLGELENLESFDISKNQLSGMIPTSLGKLQSLTYLNLSFNNFQGMIPREGFFKSSTSLSFLNNPLLCGTIPGIPACPGKRNRFQSPVFLTIFILIICISSFLSTICCGIACQRLKAIISARNSESSRRSKMPDFMHNFPRITSRQLSEATGGFDEQRLIGSGSYGQVYRGVLPDGTTVAIKVLHTQSENSTKSFNRECEVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDNHLYPHSPTSSAPGSSELNLIERVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLKDDMTALVSDFGISRLMTPGMGSGATVENMGKSTANMLTGSIGYIAPEYGFGSTASMKGDVYSFGVLVLEMVTRKRPIDDMFVEGLSLHKWVKSHYYGRVEKVVDYSLQRASRDESPEMKKMWEVAIRELIELGLLCTQESPSTRPTMLDAADDLDRLKRYLNGGDTTTTFASSLGISSSTLGDDSNYSPQIAVDRNI 1620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23117627 23136182 + Lsi03G012520.1 Lsi03g01252 659002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01252 1620 ProSitePatterns Protein kinases ATP-binding region signature. 1289 1311 IPR017441 GO:0005524
Lsi03g01252 1620 SUPERFAMILY Protein kinase-like (PK-like) 1258 1577 IPR011009 -
Lsi03g01252 1620 PANTHER OS06G0186100 PROTEIN 19 214 - -
Lsi03g01252 1620 PANTHER OS06G0186100 PROTEIN 640 1587 - -
Lsi03g01252 1620 SUPERFAMILY Protein kinase-like (PK-like) 12 275 IPR011009 -
Lsi03g01252 1620 SMART LRR_typ_2 1159 1183 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 1135 1158 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 764 788 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 990 1014 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 1038 1062 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 1087 1111 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 716 740 IPR003591 -
Lsi03g01252 1620 SMART LRR_typ_2 966 989 IPR003591 -
Lsi03g01252 1620 ProSiteProfiles Protein kinase domain profile. 1283 1584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 CDD STKc_IRAK 1289 1580 - -
Lsi03g01252 1620 Pfam Leucine rich repeat N-terminal domain 651 689 IPR013210 -
Lsi03g01252 1620 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lsi03g01252 1620 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 SUPERFAMILY L domain-like 941 1198 - -
Lsi03g01252 1620 Gene3D Phosphorylase Kinase; domain 1 1244 1358 - -
Lsi03g01252 1620 CDD STKc_OSR1_SPAK 13 274 - -
Lsi03g01252 1620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1410 1422 IPR008271 GO:0004672|GO:0006468
Lsi03g01252 1620 Gene3D Transferase(Phosphotransferase) domain 1 1359 1591 - -
Lsi03g01252 1620 MobiDBLite consensus disorder prediction 433 457 - -
Lsi03g01252 1620 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Lsi03g01252 1620 Coils Coil 564 584 - -
Lsi03g01252 1620 Pfam Protein kinase domain 1284 1573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 Pfam Protein kinase domain 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 Gene3D Ribonuclease Inhibitor 839 1214 IPR032675 -
Lsi03g01252 1620 MobiDBLite consensus disorder prediction 442 457 - -
Lsi03g01252 1620 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 SMART serkin_6 1283 1584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01252 1620 Pfam Leucine rich repeat 765 826 IPR001611 GO:0005515
Lsi03g01252 1620 Pfam Leucine rich repeat 923 978 IPR001611 GO:0005515
Lsi03g01252 1620 Pfam Leucine rich repeat 991 1051 IPR001611 GO:0005515
Lsi03g01252 1620 Pfam Leucine rich repeat 1114 1172 IPR001611 GO:0005515
Lsi03g01252 1620 PANTHER OS04G0122200 PROTEIN 19 214 - -
Lsi03g01252 1620 PANTHER OS04G0122200 PROTEIN 640 1587 - -
Lsi03g01252 1620 Gene3D Transferase(Phosphotransferase) domain 1 94 326 - -
Lsi03g01252 1620 SUPERFAMILY L domain-like 651 875 - -
Lsi03g01252 1620 Gene3D Ribonuclease Inhibitor 651 763 IPR032675 -
Lsi03g01252 1620 Gene3D Ribonuclease Inhibitor 764 838 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00993 Lsi-Chr2:10020777 Lsi03g01252 Lsi-Chr3:23117627 1.04E-32 dispersed
Lsi02g01568 Lsi-Chr2:21541017 Lsi03g01252 Lsi-Chr3:23117627 5.50E-13 dispersed
Lsi03g01252 Lsi-Chr3:23117627 Lsi06g01077 Lsi-Chr6:21026209 2.12E-11 dispersed
Lsi05g01693 Lsi-Chr5:24479118 Lsi03g01252 Lsi-Chr3:23117627 2.85E-11 dispersed
Lsi07g01113 Lsi-Chr7:16576131 Lsi03g01252 Lsi-Chr3:23117627 9.39E-14 dispersed
Lsi09g01255 Lsi-Chr9:20212599 Lsi03g01252 Lsi-Chr3:23117627 1.45E-39 dispersed
Lsi03g01252 Lsi-Chr3:23117627 Lsi03g00312 Lsi-Chr3:3768485 7.14E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83488 PF00069 Pkinase 5.30E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01252 - - csv:101211325 1858.19