Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01255 ATGGCGGATCTCAAAGAGCGGTTGCTTCCACCCAAACCTGCTTCTGCTATTAATGTTAGGGAGGCAATTAATAATCGACCATCAGCCTCTGGCAGGGTGCCTTTTCAAGGTGTGGATGTTCTAGGGCTGAAGAAGCGAGGGCAGGGACTTAGATCTTGGATCCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGGTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTAGTCAATCTAGAGCAGATTCGATGCATTATAACAGCTGATGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTACTACAGTATGTGGTAGAGCTACAAAGGCGACTGAAAACCACTGGGGTTGATGAGGTTTGGCAGAATGATGCAAATCATGGTGCTGACTTAAACCGAAGAAGGGGAAGTAGGAATTTTGATAATGTATTTGGGAACACCTCTCCTGATTATTTGCCCTTTGAGTTTAGAGCTTTAGAGGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAACTAGAAATCGAAGCATACCCATTGCTAGATGAACTTACATCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCTCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCGGAAATGTATCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGACTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCTTCGCCACCCGAAACTCGGAGGCTTGAGAAAAGCCTGAGCATTGCCAGGAGCCGCCATGAGAGCATGAGAAGTTCAGAAAGTACCACTGAAAATATAGAGGAGCTTGAGATGCTTCTTGAAGCATATTTTGTTGTGATTGATAGCACCCTGAATAAGTTGACATCGTTGAAGGAATACATCGATGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTACGTAATCAGTTGATTCAGTTTGAGCTACTGCTCACTACTGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGGATCCTGATGCATTCAAGTGGGTTCTTCTAATTACAGGAGTAAGTGGAATTGTCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGGCTGATGCCACTTTAA 1344 42.63 MADLKERLLPPKPASAINVREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDANHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVTGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESMRSSESTTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGDPDAFKWVLLITGVSGIVIFSAFVWFFRYKRLMPL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23169213 23172872 + Lsi03G012550.1 Lsi03g01255 659005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01255 447 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 447 - -
Lsi03g01255 447 Gene3D - 41 124 - -
Lsi03g01255 447 CDD Mrs2_Mfm1p-like 53 444 IPR039204 -
Lsi03g01255 447 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 437 IPR045863 -
Lsi03g01255 447 Gene3D Magnesium transport protein CorA, transmembrane region 125 378 - -
Lsi03g01255 447 Gene3D Magnesium transport protein CorA, transmembrane region 385 445 - -
Lsi03g01255 447 Coils Coil 228 255 - -
Lsi03g01255 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 447 IPR039204 -
Lsi03g01255 447 Pfam CorA-like Mg2+ transporter protein 334 435 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00598 Lsi-Chr3:7436108 Lsi03g01255 Lsi-Chr3:23169213 1.09E-107 dispersed
Lsi03g01255 Lsi-Chr3:23169213 Lsi08g00899 Lsi-Chr8:17351890 3.37E-140 dispersed
Lsi03g01255 Lsi-Chr3:23169213 Lsi09g01276 Lsi-Chr9:20562789 6.29E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01255 K16075 - csv:101217419 825.854