Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01264 ATGGCAGGTGAGGCAGCGCTGGCGAGGAATGTTCTATTTGGGAAATACGAAATGGGTCGGCTATTGGGGAAAGGAACCTTTGCGAAGGTCTATTATGGAAGAAACTTGATGACCCACGAGAGTGTTGCAATTAAAGTTATCCTCAAGGATAGGGTGAAGAAAGAGGGGCTTCTTGAGCAAATCCGGCGAGAAATTTCTGTTATGGGGTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCAACGAAATCGAAGGTGTATTTTGTGATGGAGTATGTTAATGGAGGCGAACTGTTTGTGAAATTGTCTCAACAAGGAAAATTGACTGAAGATGGAGCAAGAAAGTACTTTCAACAACTTATCTCCGCCGTGGACTTTTGCCACAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTCGACGAGAATGGGAATTTGAAGGTATCTGATTTTGGCCTCTCCGCCCTGCCTGAGCAGCTCCGGATCGATGGTTTGCTTCACACACGGTGTGGAACTCCGGCGTATGTGGCGCCTGAGGTACTCAGAAAGAAGGGTTACGACGGCGCTAAGGCGGATATTTGGTCTTGTGGGGTGATTTTGTTTGTGTTGCTTGCTGGGACTCTGCCATTTCGAGCTGATAATGTGATGAAGTTGTATAGGAAGATTTTCAAGGCAGAGTTTGAGTTTCCTCCATGGTTTTCTTCAGAAGCCATGGAAATGGTGTCTAAGCTTCTGGTTGTTGATCCTCAAAAGAGAGCTTCAATGGTTGAGATAATGCAGAGTCCTTGGTTTCAAAAGGGCTTCACAAAGCCAGTTTCATTCATTGAGAAAGATGAATTCGACAATGAATTCTCTGAATTGGCAAATCCTAAGTTGCCATCTTCTCCTCCTTTTTACAATGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACCTGTCTAGTCTGTTTGAAAGCAAGAAGAAACGAGCCTCAATTTTCACTTCAAAATGCTCTGCTTCAGCCATTATTGCCAAGCTTCAGTCTCTGGCCGTGAAACTCAACTTCAAGGCTACTAACCTGAAGGAGTTCAAGGTTAGACTGCAGGCCAAGGAGGAGGGGAGGAAAGGGAAGTTGACGGTGACCGCGGAGGTTTACAAGGCGGCACCGGAGCTGGCAGTGGTTGAGTTCTCGAAGTCGGCCGGTGACACTTTGGAATACAATAAGTTCTGTGAGAAGGATGTGAGGCCTGCATTGAAAGACATAGTTTGGAGCTGGCAAGGAGAGAATGAGTGCCTTTAA 1305 45.9 MAGEAALARNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKKGYDGAKADIWSCGVILFVLLAGTLPFRADNVMKLYRKIFKAEFEFPPWFSSEAMEMVSKLLVVDPQKRASMVEIMQSPWFQKGFTKPVSFIEKDEFDNEFSELANPKLPSSPPFYNAFEFISSMSSGFDLSSLFESKKKRASIFTSKCSASAIIAKLQSLAVKLNFKATNLKEFKVRLQAKEEGRKGKLTVTAEVYKAAPELAVVEFSKSAGDTLEYNKFCEKDVRPALKDIVWSWQGENECL 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23322728 23324032 + Lsi03G012640.1 Lsi03g01264 659014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01264 434 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524
Lsi03g01264 434 Gene3D Kinase associated domain 1, KA1 304 426 - -
Lsi03g01264 434 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 9 433 - -
Lsi03g01264 434 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01264 434 CDD CIPK_C 307 421 - -
Lsi03g01264 434 ProSiteProfiles NAF domain profile. 301 326 IPR018451 GO:0007165
Lsi03g01264 434 CDD STKc_SnRK3 15 270 - -
Lsi03g01264 434 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01264 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Lsi03g01264 434 Gene3D Transferase(Phosphotransferase) domain 1 8 303 - -
Lsi03g01264 434 SMART serkin_6 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01264 434 SUPERFAMILY Protein kinase-like (PK-like) 12 272 IPR011009 -
Lsi03g01264 434 PANTHER - 9 433 - -
Lsi03g01264 434 Pfam NAF domain 303 359 IPR004041 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01264 Lsi-Chr3:23322728 Lsi04g02076 Lsi-Chr4:27926843 0 dispersed
Lsi11g00056 Lsi-Chr11:635955 Lsi03g01264 Lsi-Chr3:23322728 2.15E-51 dispersed
Lsi03g01264 Lsi-Chr3:23322728 Lsi02g00815 Lsi-Chr2:7601919 3.43E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83489 PF00069 Pkinase 1.40E-76 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01264 - - csv:101218600 806.594