Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01265 ATGGCTGCTGGAGGGTCTGGTTCTGGGCAGCCACAATTCCTTGTGAGGGCTGGAGATGAGAGTTTTTCGCACGCGCCGTTGATCGAGAACCCGGAAACTGATCAGATTATCGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGATTTCTTGTTTCTATTGCATATATTGATCCGGGGAATTTTGAAACTGATCTACAATCTGGAGCACAGTACAAGTATGGGCTAGTAAGTCCTGTCATGTCATTAGAATTGCACTTGCTTGTTATATTCCTAGTGGACCTGACAACTAACACTGCTTCTCTCCGTCAAGTTGCTTTGGATCATATTAGTGGCTTCCTTTGCTGCCCTCATCATTCAGTCCTTAGCAGCCAATCTAGGGGTTGTCACAGTGTAGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCCAAGGCGCAAAATTTCATCCTCTGGGTCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCCGAAGTGATAGGAACCGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTTTGGTGTGGCGTTCTTCTGACAGGGCTTAGTACACTATTGCTTCTTGCACTGCAGCAATATGGGATTAGAAAGCTTGAATTCTTGATTGCCTTTCTTGTGTTGACAATTGCGATTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCTGATGTTGGGGAAATTTTTTATGGGCTATTTGTCCCTCAATTGAAAGGAAGTGGTGCGACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCATTCAGCACTGGTGCTCTCTCGGAAAATACCCAGATCCCTTTCTGGCATCAAGGAAGCTTGCAGATTTTATATGATAGAGAGTGGCTTTGCTCTTATGGTGGCCTTCCTCATTAATGTGTCAGTCATTTCTGTTAGTGGTGCAGTTTGCAATGCCCCAGATCTAAATAAGGAGGACCAAATGAGCTGCAATGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCCATTGCTTTGTTGGCATCTGGCCAGAGTTCTACCATAACAGGAACATATGCAGGACAGTATGTTATGCAGGGGTTTCTCGATTTGAAACTGACGCCATGGATCAGAAACTTTTTAACTCGAAGCTTAGCAATTGTTCCTAGTTTGATTGTTGCAATCATTGGTGGGTCTTCTGGAGCTGGGAAGCTGATCATTATTGCGTCGATGATTTTGTCATTTGAACTCCCTTTTGCTCTCGTTCCCCTTCTGAAGTTTACAAGCAGTAAGACCAAGATGGGACCACATGTCAACTCTACTGCGATTACAGTATTGACATGGATTATTGGCTTCCTCATCATGGCTATAAATATATACTACCTCATGAGCCGTTTCATCCACATGCTCCTTCATAACGATCTTCAACTCGCAGCAGTCGTGTTCATAGGGATACTTGGATTTTCAGGCATGGCACTATATTTAGCTGGAATTGCTTATCTGGTTTTGAGAAAGACCAAGGAGGTCACTCATCTCTTAGCACTAACAACAGATGAAAGTCGAAGACTGAGCAACGAGCCGAGTATGACATCGGGATATAGTCTCCCGAGTGAAGATATAGTAAGTACGCAGTTGCCTCAAAGAATTAGAACTACCAATGATGTAAACTGA 1731 43.1 MAAGGSGSGQPQFLVRAGDESFSHAPLIENPETDQIIVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLVSPVMSLELHLLVIFLVDLTTNTASLRQVALDHISGFLCCPHHSVLSSQSRGCHSVGKHLAEHCKAEYPKAQNFILWVLAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLLLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAKPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSLSGIKEACRFYMIESGFALMVAFLINVSVISVSGAVCNAPDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWIRNFLTRSLAIVPSLIVAIIGGSSGAGKLIIIASMILSFELPFALVPLLKFTSSKTKMGPHVNSTAITVLTWIIGFLIMAINIYYLMSRFIHMLLHNDLQLAAVVFIGILGFSGMALYLAGIAYLVLRKTKEVTHLLALTTDESRRLSNEPSMTSGYSLPSEDIVSTQLPQRIRTTNDVN 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23344450 23349782 + Lsi03G012650.1 Lsi03g01265 659015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01265 576 PRINTS Natural resistance-associated macrophage protein signature 430 449 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi03g01265 576 PRINTS Natural resistance-associated macrophage protein signature 157 183 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi03g01265 576 PRINTS Natural resistance-associated macrophage protein signature 185 204 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi03g01265 576 PRINTS Natural resistance-associated macrophage protein signature 370 389 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi03g01265 576 PRINTS Natural resistance-associated macrophage protein signature 260 283 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi03g01265 576 PRINTS Natural resistance-associated macrophage protein signature 210 231 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi03g01265 576 PRINTS Natural resistance-associated macrophage protein signature 398 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi03g01265 576 Hamap Divalent metal cation transporter MntH [mntH]. 39 486 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi03g01265 576 PANTHER METAL TRANSPORTER NRAMP1 136 571 - -
Lsi03g01265 576 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 95 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi03g01265 576 PANTHER METAL TRANSPORTER NRAMP1 8 95 - -
Lsi03g01265 576 Pfam Natural resistance-associated macrophage protein 138 460 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi03g01265 576 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 137 454 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lsi03g01265 576 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 136 571 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01265 Lsi-Chr3:23344450 Lsi08g00455 Lsi-Chr8:12185700 1.23E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01265 K21398 - csv:101209649 936.406