Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01266 ATGCAAATGCTTTATAAACATACATTTTTGGATCATGTGGGAGAGGGGGATCGGACCTCTGACCTCAAGGTTGAAATTTCCGGCGAAATTGTGTGTGTCACCGGCGCCGGAGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAAGGCTACACTGTTAGAGGAACTGTTAGAAACCCAGATGACCAAAAGAATGCTCATTTGAAGAACTTAGAAGGAGCTAATGAGAGGCTTTCTTTGTTTAGTGCTGATCTTCTTGATTTTGAAAGCCTTAAAGCAGCCATTATGGGTTGTCATGGTGTTTTTCACACTGCGTCTCCGGTGACCGATGATCCCGAAAAGGTAGAACAAGCCATAATTGGGACAAAGAACGTCATGACCGCCGCCGCTGAAGCGAATGTCCGACGAGTGGTCTTCACGTCGTCAATCGGTACCGTCTATATGAACCCTAACCGAAACCCGGACACGGTGGTAGATGAGTCTTGTTGGAGATCAACTAAGACATATGTAAATGCAGTTCAAGGTTATGTTGATGTTAAGGATGTTGCGAAAGCCCATGTTTTGGTTTATGAAACTCCTTCATCTTCAGGCAGATACATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTAGTTGATATTCTTAAAAACTTCTTCCCAGAATATCCTCTTCCTACCAAGTGTTCTGATGAGGTGAATCCCAAGAAGAAACCTTACAAATACACTGTTGAGAAGCTAAAGTCATTGGGAATGGAATTCACACCAATCAAACAATGCATATATGAAACTGTGAAGAGCTTACAAGAGAAGGTTTCCGGCGAAATTGTGTGTGTCACCGGCGCCGGAGGCTTCATTGCTTCATGGCTGGTAAAACTTCTTCTTGAGAAGGGCTACACTGTTAGAGGAACCGTTAGAAACCCAGATGATCAAAAGAATGCTCATTTGAAGAACTTAGAAGGAGCTAAAGAGAGGCTTTCTTTGTTTAGTGCTGATCTTCTTGATTTTGAAAGCCTCAAAGCTGCCATTACGGGTTGTCATGGTGTTTTCCATACTGCGTCTCCAGTCACCGATGATCCTGAAAAGGTGGAACAAGCCATAATCGGAACAAAGAACGTTATGACTGCTGCTGCTGAAGCAAACGTTCGACGAGTAGTGTTCACATCGTCGATCGGCACCGTCTATATGAACCCTAACCAAAGCCTGGACGCATTGGTAGATGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAGCACCAAGAATTGGTATTGCTATGCAAAGACAATAGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAAAGAGGAGTAGATCTTGTAGTTGTAAATCCAATGTTGGTATTGGGGCCTTTGTTGCAAGAAGGTGTGAATGCAAGTGTGGTTCATATAATGAAGTATTTGACAGGATCAGCTAAGACATATGTAAATGCAGTTCAAGGTTATGTTGATGTTAAGGATGTTGCAAAAGTCCATGTTTTGGTTTATGAAACTCCTTCAGCTTCAGACAGATACATTTGCGTTGAGAGTATGCTTCATTGTGGAGAATTGGTTGATATCCTTAAAAACTTCTTCCCTCAATATCCTCTTCCTACCAAGTGTTCTGATGAGATAAATCCGAGAAAGAAACCTTACAAATACACAGTTGAGAAGCTAAAGTCATTAGGAATGGAGTTCACACCAATCAAAGAATGCATATACGAAACTGTAAAGAGCCTACAAGAGAAGGTTTCCGGCCAAATTGTGTGTGTCACTGGCGCCGGTGGCTTCATCGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGCTACACTGTTAGAGGAACTGTAAGAAACCCAGATGACCAAAAGAATGCTCATTTGAAGAACTTAGAAGGAGCTAAAGAGAGACTTTCTTTGTTTAGTGCTGATCTTCTTGATTTTGACAGCCTCAAAGCTGCCATTATGGGTTGCCATGGTGTCTTCCACACTGCGTCTCCGGTGACGGATGATCCCGAAAAGGTGGAACAGGCCATTCTCGGAACAAAGAACGTCATGACCACAGCTGCTGAAGCAAACGTCCGACGAGTGGTGTTCACGTCGTCGATCGGCACCGTCTATATGAACCCTAACCGAAGCCCGGACATGGTGGTGGATGAGTCATGTTGGAGTGACCTTGAATTTTGCAAGAACACTAAGCTTCAGGCAGATACATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATCCTTAAAAACTTCTTCCCACAATATCCTCTTCCTAGCAATTTCCGGCGAAATTGTGTGTGTCACTGGTGCCGGAGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGCTACACTGTTAGAGGAACTGTTAGAAACCCAGATGATCAAAAGAATGCTCATTTGAAGAACTTAGAAGGAGCTAAAGAGAGGTTGTCTTTGTTTAGTGCTGATCTTCTTGATTTTGACAGCCTCAAAGCTGCCATTATGGGTTGTCATGGTGTTTTCCACACTGCGTCTCCGGTGACCGATGATCCCGAAAAGGTAGAACAAGCCATAATCGGAACAAAGAACGTCATGACTGCTGCCGCAGAAGCGAACGTTCGACGAGTGGTATTTACGTCATCGATCGGCACCATCTATATGAACCCTAACCGAAGCCCAGACGCGGTGGTGGACGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAACACCAAGACTATGGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAAAGAGAAGTGGATCTTGTAGTTGTGAATCCAATGTTGGTATTGGGACCTTTGTTGCAAGAAGGTGTGAATGCAAGTGTGGTTCATATAATGAAATATTTGACAGGTTCAGCTAAGACATATGTAAATGCAGTTCAAGGTTATGTTGATGTTAAGGATGTTGCAAAAGCCCATGTTTTAGTTTATGAAACTCCTTCAGCTTCAGGCAGATACATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATCCTTAAAAACTTCTTCCCACAATATCCTCTTCCTAGCAAGTGTTCTGATGAGGTAAATCCGAGAAAGAAACCTTACAAATACACAGTTGGGAAGCTAAAGTCATTAGGAATGGAGTTCACACCAATCAAACAATGCATATATGAAACTGTGAAGAGCCTACAAGACAAAGGCCATCTTCCTCTTCCCTCCCAACTTCAACATTGA 3243 43.17 MQMLYKHTFLDHVGEGDRTSDLKVEISGEIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLKNLEGANERLSLFSADLLDFESLKAAIMGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRNPDTVVDESCWRSTKTYVNAVQGYVDVKDVAKAHVLVYETPSSSGRYICVESMLHRGELVDILKNFFPEYPLPTKCSDEVNPKKKPYKYTVEKLKSLGMEFTPIKQCIYETVKSLQEKVSGEIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLKNLEGAKERLSLFSADLLDFESLKAAITGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNQSLDALVDESCWSDLEFCKSTKNWYCYAKTIAEQAAWEVAKERGVDLVVVNPMLVLGPLLQEGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKVHVLVYETPSASDRYICVESMLHCGELVDILKNFFPQYPLPTKCSDEINPRKKPYKYTVEKLKSLGMEFTPIKECIYETVKSLQEKVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLKNLEGAKERLSLFSADLLDFDSLKAAIMGCHGVFHTASPVTDDPEKVEQAILGTKNVMTTAAEANVRRVVFTSSIGTVYMNPNRSPDMVVDESCWSDLEFCKNTKLQADTFVLRVCFIVENWLISLKTSSHNILFLAISGEIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLKNLEGAKERLSLFSADLLDFDSLKAAIMGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTIYMNPNRSPDAVVDESCWSDLEFCKNTKTMAEQAAWEVAKEREVDLVVVNPMLVLGPLLQEGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHVLVYETPSASGRYICVESMLHRGELVDILKNFFPQYPLPSKCSDEVNPRKKPYKYTVGKLKSLGMEFTPIKQCIYETVKSLQDKGHLPLPSQLQH 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23357447 23384643 - Lsi03G012660.1 Lsi03g01266 659016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01266 1080 Pfam NAD dependent epimerase/dehydratase family 771 994 IPR001509 -
Lsi03g01266 1080 Pfam NAD dependent epimerase/dehydratase family 278 510 IPR001509 -
Lsi03g01266 1080 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 274 583 - -
Lsi03g01266 1080 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 270 IPR036291 -
Lsi03g01266 1080 Pfam NAD(P)H-binding 593 713 IPR016040 -
Lsi03g01266 1080 Pfam NAD(P)H-binding 35 154 IPR016040 -
Lsi03g01266 1080 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 585 734 - -
Lsi03g01266 1080 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 168 273 - -
Lsi03g01266 1080 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 25 166 - -
Lsi03g01266 1080 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 766 1066 IPR036291 -
Lsi03g01266 1080 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 765 1074 - -
Lsi03g01266 1080 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 25 166 - -
Lsi03g01266 1080 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 584 734 IPR036291 -
Lsi03g01266 1080 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 274 583 - -
Lsi03g01266 1080 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 585 734 - -
Lsi03g01266 1080 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 765 1074 - -
Lsi03g01266 1080 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 168 273 - -
Lsi03g01266 1080 CDD FR_SDR_e 771 1049 - -
Lsi03g01266 1080 CDD FR_SDR_e 278 563 - -
Lsi03g01266 1080 Gene3D - 21 167 - -
Lsi03g01266 1080 Gene3D - 168 272 - -
Lsi03g01266 1080 Gene3D - 273 583 - -
Lsi03g01266 1080 Gene3D - 584 741 - -
Lsi03g01266 1080 Gene3D - 763 1080 - -
Lsi03g01266 1080 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 274 581 IPR036291 -
Lsi03g01266 1080 CDD FR_SDR_e 31 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01571 Lsi-Chr2:21570174 Lsi03g01266 Lsi-Chr3:23357447 9.67E-13 dispersed
Lsi03g01266 Lsi-Chr3:23357447 Lsi06g01091 Lsi-Chr6:21199943 9.13E-16 dispersed
Lsi10g00278 Lsi-Chr10:4455691 Lsi03g01266 Lsi-Chr3:23357447 1.71E-17 dispersed
Lsi03g01266 Lsi-Chr3:23357447 Lsi03g01267 Lsi-Chr3:23392896 1.81E-36 tandem
Lsi02g01234 Lsi-Chr2:16202906 Lsi03g01266 Lsi-Chr3:23357447 6.31E-14 transposed
Lsi04g00258 Lsi-Chr4:2636304 Lsi03g01266 Lsi-Chr3:23357447 6.85E-16 transposed
Lsi04g01575 Lsi-Chr4:23330314 Lsi03g01266 Lsi-Chr3:23357447 1.75E-12 transposed
Lsi04g02425 Lsi-Chr4:31351954 Lsi03g01266 Lsi-Chr3:23357447 2.41E-11 transposed
Lsi05g00665 Lsi-Chr5:8744857 Lsi03g01266 Lsi-Chr3:23357447 3.41E-11 transposed
Lsi05g00774 Lsi-Chr5:11002724 Lsi03g01266 Lsi-Chr3:23357447 3.01E-13 transposed
Lsi08g00824 Lsi-Chr8:16623892 Lsi03g01266 Lsi-Chr3:23357447 5.88E-06 transposed
Lsi09g01896 Lsi-Chr9:27787846 Lsi03g01266 Lsi-Chr3:23357447 1.01E-24 transposed
Lsi10g00020 Lsi-Chr10:350884 Lsi03g01266 Lsi-Chr3:23357447 7.53E-27 transposed
Lsi10g01070 Lsi-Chr10:14926398 Lsi03g01266 Lsi-Chr3:23357447 1.18E-28 transposed
Lsi02g02668 Lsi-Chr2:33159675 Lsi03g01266 Lsi-Chr3:23357447 1.46E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01266 K09753 - csv:116401652 590.112