Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01267 ATGAATAATGATCATTTGAAAGAGTTGGATGGCGCTGAGGAAAGGTTAAAGCTGTACGGTGCTGATCTTCTTGATTTTGAGAGCCTTAAAGCCGCCATTATCGGTTGCGAGGGTGTTTTCCACACGGCGTCTCCGGTGACCGATGACCCAGTCCGGCGAGTGGTGTTCACATCGTCGATTGGAACTATACACATGAACCCTCATCGGAGCCCCGACACGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAAAATACAAAGAACTGGTATTGTTATGCAAAAACAGTGGCAGAGCAAACAGCATGGGCAATGGCAAAGGAGAAAGGGGTGGATCTAGTAGCGGTGAACCCAATGTTGGTGCTTGGACCATTATTACAGCAAACAATCAATGCAAGTGTAACTCATTTAATGAAGTACTTGACAGGATCAGTCAAGACATATGTTAATGCAGTTCAAGGTTGGATAGAGCTTTCAATTTAA 489 44.99 MNNDHLKELDGAEERLKLYGADLLDFESLKAAIIGCEGVFHTASPVTDDPVRRVVFTSSIGTIHMNPHRSPDTVVDESCWSDLDFCKNTKNWYCYAKTVAEQTAWAMAKEKGVDLVAVNPMLVLGPLLQQTINASVTHLMKYLTGSVKTYVNAVQGWIELSI 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23392896 23398714 - Lsi03G012670.1 Lsi03g01267 659017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01267 162 Gene3D - 1 50 - -
Lsi03g01267 162 Gene3D - 51 161 - -
Lsi03g01267 162 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 2 50 - -
Lsi03g01267 162 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 150 IPR036291 -
Lsi03g01267 162 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 2 50 - -
Lsi03g01267 162 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 50 159 - -
Lsi03g01267 162 Pfam NAD dependent epimerase/dehydratase family 50 143 IPR001509 -
Lsi03g01267 162 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 50 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01267 Lsi-Chr3:23392896 Lsi10g01070 Lsi-Chr10:14926398 7.34E-09 dispersed
Lsi03g01266 Lsi-Chr3:23357447 Lsi03g01267 Lsi-Chr3:23392896 1.81E-36 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01267 K09753 - csv:101219069 284.648