Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01268 ATGGCTGGAGAAACTCCCGATGGCCACTCCTCCGGCAATCCGCCTTCGACGCCTGATTCCCCCACCACCTCCGCCGGTTTCGAAACAGACCAGCTTCCTCATCTCAGTCAAACTTCCGACAACTACCCCGATGAGGACGAAGCCGCCGTTGATCCTCATATCCTTCCCGACGAGCCTGACCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGACAATTTCTTGGACGATTATCGGAGGATGGACGAGCATGACCAGTACGAGTCATTGGGCCTCGACGATTCTTTAGAGGACGAGAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCCGAGATGGAACTGGAAACTCGCGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTATTACATGATCATGACTCTGAGGATGACAACTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGGCCTCCAGCTGGAGCAAGAAGCTATGATGACATTGATGGTATGCAAAGTTCTCCGGGTAGATCACAAAGGGAAAACTCACGAGATGATGTGCCCATGACAGATCATTCTGTCGATGACCAATATGAGGATGACGACGATGATGAAAATGAGCATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAACATGTTACCATGGATGCGGTTCGGCGCTTTATAGGCAAAAAATTTAAGAAATTCTTAGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTACATGCGATTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTCATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAGCCCGTCTTAGAAGTTATGGAAGATGTCGCAAAGAAGGTTGTTTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTACGTTCGCATCAATAATTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGTATTGGGGGCGTAGTGACCCGACGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAATGTGGCACAATATTGGGACCATTTTTTCAGAATTCTTACTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAATCAAAAGGGCCATTCACAGTAAATGTCGAGCAGACTATATATAGGAACTATCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTTCCAAGGTACAAGGAAGTGATACTATTGAATGATCTAATTGATTGTGCCCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAATACAAAGAACGGTTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTATTTTCTGCTTACAAGCTTACCCAGGAAGACAAGGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCATCAATCTATGGTCACGATGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGTGATATCAATGTTCTTCTACTAGGTGATCCTGGCACAGCCAAATCTCAGTTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGACTAACGGCAGCAGTGCATAAGGATCCTGTCACAAGGGAGTGGACCCTTGAGGGAGGTGCCCTTGTATTAGCCGATAGAGGAATCTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATCCATGAAGCAATGGAGCAGCAGAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCGGTCATTGCTGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTTTCACAAAATGTTGAGCTGACCGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTGGACTCTGTAACAGACGAAATGCTTGCTAGGTTTGTGGTTGATAGTCATTTCAAATCGCAGCCAAAGGGAGCCAATCTTGATGACAAGTCTGTAAATGAATCTCAGGAGGATAGTCAAGACTCTGCAAGACCACTGGATCCCGAGGTGCTCCCCCAAGATCTACTGAGGAAGTACATAACTTATTCTAAGTTAAATGTTTTTCCAAGGTTGCATGATGCTGATTTGGATAAGTTAACACATGTCTATGCAGAATTACGAAGGGAATCTTCTCACGGGCAAGGAGTTCCCATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTTGATTCTTTCATTTCAACCCAGAAATTTGGAGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGCTGCTATATCTTCTCCGAGAGCTCGTGAAGAATGCACTTCACTTTGAGGAAATTGTTTGTGGATCTACGTCGGAGCTTACCCAAATCAATGTGAAGTTGGAAGACCTACAAAGCAAGGCACAGGATCATGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAATTTTGTGCTGGATGAAGAGCATGGACTAATCAGGCATCACCTTGCCAGATGA 2838 43.52 MAGETPDGHSSGNPPSTPDSPTTSAGFETDQLPHLSQTSDNYPDEDEAAVDPHILPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDLDQIMEDRRAAEMELETRDAQFTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAGARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDDDDDENEHEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLARFVVDSHFKSQPKGANLDDKSVNESQEDSQDSARPLDPEVLPQDLLRKYITYSKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVCGSTSELTQINVKLEDLQSKAQDHEIYDLKPFFTSSHFSNANFVLDEEHGLIRHHLAR 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23425369 23431623 + Lsi03G012680.1 Lsi03g01268 659018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01268 945 SMART mcm 325 840 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi03g01268 945 Gene3D - 356 406 - -
Lsi03g01268 945 ProSiteProfiles MCM family domain profile. 508 714 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g01268 945 Gene3D - 221 325 - -
Lsi03g01268 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 549 564 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g01268 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 609 623 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g01268 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 637 650 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g01268 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 688 696 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g01268 945 PRINTS Mini-chromosome maintenance (MCM) protein family signature 661 673 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g01268 945 ProSitePatterns MCM family signature. 617 625 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lsi03g01268 945 MobiDBLite consensus disorder prediction 723 748 - -
Lsi03g01268 945 Gene3D - 488 862 IPR027417 -
Lsi03g01268 945 SUPERFAMILY Nucleic acid-binding proteins 230 477 IPR012340 -
Lsi03g01268 945 Pfam MCM AAA-lid domain 755 839 IPR041562 -
Lsi03g01268 945 MobiDBLite consensus disorder prediction 731 745 - -
Lsi03g01268 945 PANTHER DNA HELICASE 146 938 - -
Lsi03g01268 945 CDD MCM2 511 838 - -
Lsi03g01268 945 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 146 938 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi03g01268 945 MobiDBLite consensus disorder prediction 116 159 - -
Lsi03g01268 945 MobiDBLite consensus disorder prediction 9 43 - -
Lsi03g01268 945 Pfam MCM OB domain 328 455 IPR033762 -
Lsi03g01268 945 Gene3D - 329 454 IPR012340 -
Lsi03g01268 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 842 IPR027417 -
Lsi03g01268 945 Pfam Mini-chromosome maintenance protein 2 45 198 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lsi03g01268 945 Pfam MCM N-terminal domain 229 322 IPR027925 -
Lsi03g01268 945 MobiDBLite consensus disorder prediction 57 72 - -
Lsi03g01268 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 457 468 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lsi03g01268 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 396 410 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lsi03g01268 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 338 355 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lsi03g01268 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 361 373 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lsi03g01268 945 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 472 483 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Lsi03g01268 945 MobiDBLite consensus disorder prediction 1 83 - -
Lsi03g01268 945 MobiDBLite consensus disorder prediction 176 191 - -
Lsi03g01268 945 MobiDBLite consensus disorder prediction 116 203 - -
Lsi03g01268 945 Pfam MCM P-loop domain 496 718 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00160 Lsi-Chr1:1608017 Lsi03g01268 Lsi-Chr3:23425369 3.91E-94 dispersed
Lsi03g00736 Lsi-Chr3:9886902 Lsi03g01268 Lsi-Chr3:23425369 6.46E-28 dispersed
Lsi03g01268 Lsi-Chr3:23425369 Lsi11g00378 Lsi-Chr11:3882467 2.00E-97 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01268 K02540 - csv:101219546 1767.67