Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01268 | ATGGCTGGAGAAACTCCCGATGGCCACTCCTCCGGCAATCCGCCTTCGACGCCTGATTCCCCCACCACCTCCGCCGGTTTCGAAACAGACCAGCTTCCTCATCTCAGTCAAACTTCCGACAACTACCCCGATGAGGACGAAGCCGCCGTTGATCCTCATATCCTTCCCGACGAGCCTGACCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGACAATTTCTTGGACGATTATCGGAGGATGGACGAGCATGACCAGTACGAGTCATTGGGCCTCGACGATTCTTTAGAGGACGAGAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCCGAGATGGAACTGGAAACTCGCGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTATTACATGATCATGACTCTGAGGATGACAACTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGGCCTCCAGCTGGAGCAAGAAGCTATGATGACATTGATGGTATGCAAAGTTCTCCGGGTAGATCACAAAGGGAAAACTCACGAGATGATGTGCCCATGACAGATCATTCTGTCGATGACCAATATGAGGATGACGACGATGATGAAAATGAGCATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAACATGTTACCATGGATGCGGTTCGGCGCTTTATAGGCAAAAAATTTAAGAAATTCTTAGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTACATGCGATTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTCATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAGCCCGTCTTAGAAGTTATGGAAGATGTCGCAAAGAAGGTTGTTTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTACGTTCGCATCAATAATTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGTATTGGGGGCGTAGTGACCCGACGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAATGTGGCACAATATTGGGACCATTTTTTCAGAATTCTTACTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAATCAAAAGGGCCATTCACAGTAAATGTCGAGCAGACTATATATAGGAACTATCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTTCCAAGGTACAAGGAAGTGATACTATTGAATGATCTAATTGATTGTGCCCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAATACAAAGAACGGTTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTATTTTCTGCTTACAAGCTTACCCAGGAAGACAAGGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCATCAATCTATGGTCACGATGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGTGATATCAATGTTCTTCTACTAGGTGATCCTGGCACAGCCAAATCTCAGTTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGACTAACGGCAGCAGTGCATAAGGATCCTGTCACAAGGGAGTGGACCCTTGAGGGAGGTGCCCTTGTATTAGCCGATAGAGGAATCTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATCCATGAAGCAATGGAGCAGCAGAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCGGTCATTGCTGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTTTCACAAAATGTTGAGCTGACCGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTGGACTCTGTAACAGACGAAATGCTTGCTAGGTTTGTGGTTGATAGTCATTTCAAATCGCAGCCAAAGGGAGCCAATCTTGATGACAAGTCTGTAAATGAATCTCAGGAGGATAGTCAAGACTCTGCAAGACCACTGGATCCCGAGGTGCTCCCCCAAGATCTACTGAGGAAGTACATAACTTATTCTAAGTTAAATGTTTTTCCAAGGTTGCATGATGCTGATTTGGATAAGTTAACACATGTCTATGCAGAATTACGAAGGGAATCTTCTCACGGGCAAGGAGTTCCCATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTTGATTCTTTCATTTCAACCCAGAAATTTGGAGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGCTGCTATATCTTCTCCGAGAGCTCGTGAAGAATGCACTTCACTTTGAGGAAATTGTTTGTGGATCTACGTCGGAGCTTACCCAAATCAATGTGAAGTTGGAAGACCTACAAAGCAAGGCACAGGATCATGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAATTTTGTGCTGGATGAAGAGCATGGACTAATCAGGCATCACCTTGCCAGATGA | 2838 | 43.52 | MAGETPDGHSSGNPPSTPDSPTTSAGFETDQLPHLSQTSDNYPDEDEAAVDPHILPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDLDQIMEDRRAAEMELETRDAQFTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAGARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDDDDDENEHEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLARFVVDSHFKSQPKGANLDDKSVNESQEDSQDSARPLDPEVLPQDLLRKYITYSKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVCGSTSELTQINVKLEDLQSKAQDHEIYDLKPFFTSSHFSNANFVLDEEHGLIRHHLAR | 945 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 23425369 | 23431623 | + | Lsi03G012680.1 | Lsi03g01268 | 659018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01268 | 945 | SMART | mcm | 325 | 840 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g01268 | 945 | Gene3D | - | 356 | 406 | - | - | |
Lsi03g01268 | 945 | ProSiteProfiles | MCM family domain profile. | 508 | 714 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g01268 | 945 | Gene3D | - | 221 | 325 | - | - | |
Lsi03g01268 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 549 | 564 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g01268 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 609 | 623 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g01268 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 637 | 650 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g01268 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 688 | 696 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g01268 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 661 | 673 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g01268 | 945 | ProSitePatterns | MCM family signature. | 617 | 625 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
Lsi03g01268 | 945 | MobiDBLite | consensus disorder prediction | 723 | 748 | - | - | |
Lsi03g01268 | 945 | Gene3D | - | 488 | 862 | IPR027417 | - | |
Lsi03g01268 | 945 | SUPERFAMILY | Nucleic acid-binding proteins | 230 | 477 | IPR012340 | - | |
Lsi03g01268 | 945 | Pfam | MCM AAA-lid domain | 755 | 839 | IPR041562 | - | |
Lsi03g01268 | 945 | MobiDBLite | consensus disorder prediction | 731 | 745 | - | - | |
Lsi03g01268 | 945 | PANTHER | DNA HELICASE | 146 | 938 | - | - | |
Lsi03g01268 | 945 | CDD | MCM2 | 511 | 838 | - | - | |
Lsi03g01268 | 945 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 146 | 938 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g01268 | 945 | MobiDBLite | consensus disorder prediction | 116 | 159 | - | - | |
Lsi03g01268 | 945 | MobiDBLite | consensus disorder prediction | 9 | 43 | - | - | |
Lsi03g01268 | 945 | Pfam | MCM OB domain | 328 | 455 | IPR033762 | - | |
Lsi03g01268 | 945 | Gene3D | - | 329 | 454 | IPR012340 | - | |
Lsi03g01268 | 945 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 518 | 842 | IPR027417 | - | |
Lsi03g01268 | 945 | Pfam | Mini-chromosome maintenance protein 2 | 45 | 198 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
Lsi03g01268 | 945 | Pfam | MCM N-terminal domain | 229 | 322 | IPR027925 | - | |
Lsi03g01268 | 945 | MobiDBLite | consensus disorder prediction | 57 | 72 | - | - | |
Lsi03g01268 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 457 | 468 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
Lsi03g01268 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 396 | 410 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
Lsi03g01268 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 338 | 355 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
Lsi03g01268 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 361 | 373 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
Lsi03g01268 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 472 | 483 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
Lsi03g01268 | 945 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
Lsi03g01268 | 945 | MobiDBLite | consensus disorder prediction | 176 | 191 | - | - | |
Lsi03g01268 | 945 | MobiDBLite | consensus disorder prediction | 116 | 203 | - | - | |
Lsi03g01268 | 945 | Pfam | MCM P-loop domain | 496 | 718 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00160 | Lsi-Chr1:1608017 | Lsi03g01268 | Lsi-Chr3:23425369 | 3.91E-94 | dispersed | |
Lsi03g00736 | Lsi-Chr3:9886902 | Lsi03g01268 | Lsi-Chr3:23425369 | 6.46E-28 | dispersed | |
Lsi03g01268 | Lsi-Chr3:23425369 | Lsi11g00378 | Lsi-Chr11:3882467 | 2.00E-97 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01268 | K02540 | - | csv:101219546 | 1767.67 |