Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01276 ATGGTGTTGAGCAAAATGTGGGTTGTTATGGCTGCTATTTTTGGTTTTAGTGTTATAATTTGGCTCTATGGTTTGAAATATTCAAAATATTATGGAAAACTTCCAAAAGGTTCAATGGGTTTTCCCATAATTGGTGAATCAAGGCAGTTCTTTGCTCCTAATCCATCTTTTGATTTATCTCCTTGCATCAAAGACAGAATTCTCAAGTATGGACCAATTTTCAAAACAAGATTAGTGGGGAAACCATTAATTATTTCAACAGATCCTGAATTGAATTATATTATATTTCAACAAGAGGAACAATTGTTTGAGTGTTGGTATCCAGAGACCTTTAGAAAGATATTTGGAGGACAATCTATAGGGTCCTTGCATGGTTTTATGCATAAGTATTTGAAGAACATGATTATTAATGTTTTTGGAATTGAAAGTTTGAAAAATATGATTTTTGAAGTTGAAGTTGCAGCAACTACAAGATTGAAGAAATGGGCATTTCATAATACAGTTGAATTGAAGGATGAGATTGCAAATATGATATTTGATCTCACTGCAAAGAGATTAATTAGTTATGATCCAAAAAAGTCTTCAGAAAATTTGAGAGAGAATTTTGTTGCCTTCATTCAGGGTTTGATCTCTTTCCCTCTTGATATTCCTGGAACCTCTTTTCACAAATGTTTACAGGGTAGAAAAAAAGTAATTAGGATGCTGGAAAACATGTTACAAGAAAGGCAGCAAAATCCAAGGAAACAACATATTGATTATTTTGATTATGTTCTTCAAGAACTCCAGAAAGATGGAACTCCTCTCACCCAAGAAATTGTTTTGAACTTGATCTTTGCGATTCTTTTTGCAAGCTATGAAACCACTTCAATTGCTTTGACTTTAGCCATCAAATTTCTCATAGACCATCCCCACGTGTTGAACGAATTAATGGTACGTTCCTTTTTAAATTTTCTGAACGAAACATTGAGGTTGGCAAATATTGCTCCAGGGATCTTTCGAAGAGCATTAAAAGACGTTGAGTTTAAGGGATATACGATCCCAAAAGGATGGGCTGTTATGATATGTGATGGAGCATCGAAGCATTTCATGGCATTTGGTGGGGGAATGAGATTTTGCATTGGTGCAGACTTTGCCAAAATGCAAATGGCTGTGTTTCTCCATAACTTGGTTACCAATTACACGTTGAAGGCAATTAAAGGAGGCAATATTGTTCGAACCCCAGGCGTACAATTTCCTGATGGCTTTCACGTTGAGATCGTAAAGAAAGAGTAG 1272 35.22 MVLSKMWVVMAAIFGFSVIIWLYGLKYSKYYGKLPKGSMGFPIIGESRQFFAPNPSFDLSPCIKDRILKYGPIFKTRLVGKPLIISTDPELNYIIFQQEEQLFECWYPETFRKIFGGQSIGSLHGFMHKYLKNMIINVFGIESLKNMIFEVEVAATTRLKKWAFHNTVELKDEIANMIFDLTAKRLISYDPKKSSENLRENFVAFIQGLISFPLDIPGTSFHKCLQGRKKVIRMLENMLQERQQNPRKQHIDYFDYVLQELQKDGTPLTQEIVLNLIFAILFASYETTSIALTLAIKFLIDHPHVLNELMVRSFLNFLNETLRLANIAPGIFRRALKDVEFKGYTIPKGWAVMICDGASKHFMAFGGGMRFCIGADFAKMQMAVFLHNLVTNYTLKAIKGGNIVRTPGVQFPDGFHVEIVKKE 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23551466 23557555 - Lsi03G012760.1 Lsi03g01276 659026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01276 423 Gene3D Cytochrome P450 359 412 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 PRINTS E-class P450 group I signature 372 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 PRINTS E-class P450 group I signature 362 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 PRINTS E-class P450 group I signature 272 289 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 PRINTS P450 superfamily signature 363 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 PRINTS P450 superfamily signature 283 300 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 PRINTS P450 superfamily signature 316 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 PANTHER CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 2 358 414 - -
Lsi03g01276 423 PANTHER CYTOCHROME P450 26 16 310 - -
Lsi03g01276 423 PANTHER CYTOCHROME P450 26 316 355 - -
Lsi03g01276 423 Pfam Cytochrome P450 358 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 Pfam Cytochrome P450 69 309 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 Pfam Cytochrome P450 317 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 SUPERFAMILY Cytochrome P450 33 418 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 365 374 IPR017972 GO:0005506|GO:0016705
Lsi03g01276 423 PANTHER CYTOCHROME P450 26 358 414 - -
Lsi03g01276 423 Gene3D Cytochrome P450 27 358 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01276 423 PANTHER CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 2 16 310 - -
Lsi03g01276 423 PANTHER CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 2 316 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01276 Lsi-Chr3:23551466 Lsi07g01388 Lsi-Chr7:20145497 0 dispersed
Lsi03g01276 Lsi-Chr3:23551466 Lsi03g01277 Lsi-Chr3:23557615 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01276 - - csv:101209116 671.774