Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01277 ATGTGGGTTGTTATGGCTGCTATTTTTGGTTTTAGTGTTATAATTTGGCTCTATGGTTTGAAATATTCAAAATATTATGGAAAACTTCCAAAAGGTTCAATGGGATTTCCCATAATTGGTGAATCAAGGCAGTTCTTTGCTCCTAATCCATCTTTTGATTTATCTCCTTTCATCAAAGACAGAATTCTCAAGTATGGACCAATTTTCAAAACAAGATTAGTGGGGAAACCATTAATTATTTCAGCAGATCCTGAACTGAATTATATTATATTTCAACAAGAGGAACAATTGTTTGAGTGTTGGTATCCAGAGACCTTCAGAAAGATATTTGGAGGACAATTTGTAGGGTCCTTGCATGGTTTTATGCATAAATATTTGAAGAACATGATTATTAATGTTTTTGGAATTGAAAGTTTGAAAAATATGATTTTTGAAGTTGAAGTTGCAGCAACTACAAGATTGAAGAAATGGGCATCTCATAATACAGTTGAATTGAAGGATGAGATTGCAAATATGATATTTGATCTCACTGCAAAGAGATTAATTAGTTATGATCCAAAAAAGTCTTCAGAAAATTTGAGAGAGAACTTTGTTGCCTTCATTCAGGGTTTGATCTCTTTCCCTCTTGATATTCCTGGAACCTCTTTTCACAAATGCTTACAGCAAAATCCAAGGAAACAACATATTGATTATTTTGATTATGTTCTTCAAGAACTCCAAAAAGATGGAACTCCTCTCACCCAAGAAATTGCTTTGGACTTGATCTTTTTGCTTCTATTTGCAAGCTATGAAACCACTTCAATTGCTTTGACTTTAGCCATCAAATTTCTCATAGACCACCCCCACGTCTTGAACGAGTTAACGGTGCATTCCTTTTTAGATGTATCTTTGGTTTCATCACATCCCTTGTTAACATATTTAATTTCCATGCAAAATCTTGATCATCAGGCAGAACATGAAAGAATTTTGAAGGAGAGGAAGAATAAAAGTGGTGGGATTACCTGGAACGAATACAAATCCATGACATTTACATTCAAGGTCAACGAAGCATTCGGAAAATTATTTAGTTGTGTTATTTTTCTAAACGAAACATTGAGGTTGGCAAATATTGCTCCAGGTATATTTCGAAGAGCATTAAAAGATGTTGAGTTTAAGGGATACACAATTCCAGAAGGATGGGCTGTTATGAGATGTGATGGGGCATCGAAGCATTTCATGGCATTTGGTGGAGGAATGAGATTTTGCATTGGTGCAGACTTTGCCAAAATGCAAATGGCTGTGTTTCTCCATAACTTGGTTACCAATTACACGTTGAAGGCAATTAAAGGAGGCAATATTGTTCGAACCCCAGGCGTACAATTTCCCGATGGCTTTCATGTTGAGATCGTTAAAAAAAAAGTAGTAGCCCTCCAAATACTAACCAAAACCTATAAGTCTTCTAAA 1443 35.14 MWVVMAAIFGFSVIIWLYGLKYSKYYGKLPKGSMGFPIIGESRQFFAPNPSFDLSPFIKDRILKYGPIFKTRLVGKPLIISADPELNYIIFQQEEQLFECWYPETFRKIFGGQFVGSLHGFMHKYLKNMIINVFGIESLKNMIFEVEVAATTRLKKWASHNTVELKDEIANMIFDLTAKRLISYDPKKSSENLRENFVAFIQGLISFPLDIPGTSFHKCLQQNPRKQHIDYFDYVLQELQKDGTPLTQEIALDLIFLLLFASYETTSIALTLAIKFLIDHPHVLNELTVHSFLDVSLVSSHPLLTYLISMQNLDHQAEHERILKERKNKSGGITWNEYKSMTFTFKVNEAFGKLFSCVIFLNETLRLANIAPGIFRRALKDVEFKGYTIPEGWAVMRCDGASKHFMAFGGGMRFCIGADFAKMQMAVFLHNLVTNYTLKAIKGGNIVRTPGVQFPDGFHVEIVKKKVVALQILTKTYKSSK 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23557615 23562649 - Lsi03G012770.1 Lsi03g01277 659027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01277 481 Gene3D Cytochrome P450 22 397 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 408 417 IPR017972 GO:0005506|GO:0016705
Lsi03g01277 481 PANTHER CYTOCHROME P450 26 11 398 - -
Lsi03g01277 481 PRINTS P450 superfamily signature 261 278 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 PRINTS P450 superfamily signature 415 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 PRINTS P450 superfamily signature 406 415 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 PANTHER CYTOCHROME P450 26 402 460 - -
Lsi03g01277 481 SUPERFAMILY Cytochrome P450 27 452 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 Pfam Cytochrome P450 401 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 Pfam Cytochrome P450 361 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 Pfam Cytochrome P450 223 287 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 PRINTS E-class P450 group I signature 415 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 PRINTS E-class P450 group I signature 405 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01277 481 PANTHER CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 2 402 460 - -
Lsi03g01277 481 PANTHER CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 2 11 398 - -
Lsi03g01277 481 Gene3D Cytochrome P450 398 456 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01277 Lsi-Chr3:23557615 Lsi07g01388 Lsi-Chr7:20145497 0 dispersed
Lsi07g01381 Lsi-Chr7:20076250 Lsi03g01277 Lsi-Chr3:23557615 5.83E-14 dispersed
Lsi03g01276 Lsi-Chr3:23551466 Lsi03g01277 Lsi-Chr3:23557615 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01277 - - csv:101209116 681.789