Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01282 ATGATGGCTTTTAGCTTGGTTTCTGCATGGAACAAGAGGCGTAGACAAAAAAAGTCTTCTCAATTAGACCATCAAATTGCAGACCCTTGGATCTATAGACCAGTTGAGTTGTGGCAACTTGAGGATCAAACCCTTCAAAGACCTTCCAAAAGACATCATGGATCCGCTGTCTTCACGTTTCGGGAAATGGAAGATGCTACGTGTTCCTTTAGCGACGCTAACTTGCTCGGAAAAGGTGGTTTCGGTCGAGTTTATCGAGGCACCTTGCGATCTGGAGAGGTTGTAGCAATCAAAAAAATGGAGATGCCAGCATTTAAGGAAGCAGAAGGAGAGCGTGAGTTCAGAGTGGAAGTTGACATTCTGAGCAGATTGGACCATCCAAATCTTGTTTCCTTGATTGGTTATTGTGCAGATGGGAAGCATCGGTTTCTAGTTTATGAATATATGCATAAAGGGAATTTACAAGATCATTTAAATGGAATTGGAGAAGCAAAGATGGATTGGGAAAGGAGGCTGAAAGTGGCACTTGGAGCAGCAAAGGGACTTGCCTATCTCCATTCAAGTTCAGCTGCTGGGATCCCAATTGTTCATAGAGATTTCAAATCCACTAATATTCTTCTCGACTCCAACTTGGATGCAAAGATATCGGACTTTGGGCTTGCAAAGTTTATGCCAGAAGGACAAGAATCACATGTCACTGCAAGAGTCCTCGGCACGTTTGGATACTTTGACCCTGAGTATACTTCGACAGGAAAATTGAGCTTGCAAAGTGATGTATATGCATTTGGAGTGGTTCTTCTTGAGCTGCTGACGGGCCGCCGAGCAGTGGACTTGAACCAGGGCCCAAACGATCAAAACCTTGTCCTACTGGTACGACATATATTGAACGATCGAAAAAAATTACGCAAAGTGATAGATCCAGAAATGAGTCGAAGTTCGTATACAATGGAATCTATAATCATATTTGCAAATTTGGCTTCACGTTGCGTCCGAACAGAGAGTAGTGAAAGACCAACAATGGCAGAATGTGTAAAGGAGCTTCAAATGATTATCTACACAAAGTTGCAAACTCGCAAGGCTTAA 1083 42.84 MMAFSLVSAWNKRRRQKKSSQLDHQIADPWIYRPVELWQLEDQTLQRPSKRHHGSAVFTFREMEDATCSFSDANLLGKGGFGRVYRGTLRSGEVVAIKKMEMPAFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHKGNLQDHLNGIGEAKMDWERRLKVALGAAKGLAYLHSSSAAGIPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLLVRHILNDRKKLRKVIDPEMSRSSYTMESIIIFANLASRCVRTESSERPTMAECVKELQMIIYTKLQTRKA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23652515 23658819 + Lsi03G012820.1 Lsi03g01282 659032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01282 360 ProSiteProfiles Protein kinase domain profile. 70 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01282 360 CDD STKc_IRAK 76 348 - -
Lsi03g01282 360 PIRSF ILK 40 359 - -
Lsi03g01282 360 Pfam Protein kinase domain 72 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01282 360 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Lsi03g01282 360 SUPERFAMILY Protein kinase-like (PK-like) 48 353 IPR011009 -
Lsi03g01282 360 Gene3D Transferase(Phosphotransferase) domain 1 149 359 - -
Lsi03g01282 360 Gene3D Phosphorylase Kinase; domain 1 36 148 - -
Lsi03g01282 360 PANTHER OS01G0750732 PROTEIN 1 357 - -
Lsi03g01282 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lsi03g01282 360 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL28-RELATED 1 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01282 Lsi-Chr3:23652515 Lsi05g01512 Lsi-Chr5:22909461 3.68E-92 dispersed
Lsi03g01282 Lsi-Chr3:23652515 Lsi03g02064 Lsi-Chr3:31958333 1.30E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83490 PF00069 Pkinase 4.10E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01282 - - cmo:103502985 658.292