Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01282 | ATGATGGCTTTTAGCTTGGTTTCTGCATGGAACAAGAGGCGTAGACAAAAAAAGTCTTCTCAATTAGACCATCAAATTGCAGACCCTTGGATCTATAGACCAGTTGAGTTGTGGCAACTTGAGGATCAAACCCTTCAAAGACCTTCCAAAAGACATCATGGATCCGCTGTCTTCACGTTTCGGGAAATGGAAGATGCTACGTGTTCCTTTAGCGACGCTAACTTGCTCGGAAAAGGTGGTTTCGGTCGAGTTTATCGAGGCACCTTGCGATCTGGAGAGGTTGTAGCAATCAAAAAAATGGAGATGCCAGCATTTAAGGAAGCAGAAGGAGAGCGTGAGTTCAGAGTGGAAGTTGACATTCTGAGCAGATTGGACCATCCAAATCTTGTTTCCTTGATTGGTTATTGTGCAGATGGGAAGCATCGGTTTCTAGTTTATGAATATATGCATAAAGGGAATTTACAAGATCATTTAAATGGAATTGGAGAAGCAAAGATGGATTGGGAAAGGAGGCTGAAAGTGGCACTTGGAGCAGCAAAGGGACTTGCCTATCTCCATTCAAGTTCAGCTGCTGGGATCCCAATTGTTCATAGAGATTTCAAATCCACTAATATTCTTCTCGACTCCAACTTGGATGCAAAGATATCGGACTTTGGGCTTGCAAAGTTTATGCCAGAAGGACAAGAATCACATGTCACTGCAAGAGTCCTCGGCACGTTTGGATACTTTGACCCTGAGTATACTTCGACAGGAAAATTGAGCTTGCAAAGTGATGTATATGCATTTGGAGTGGTTCTTCTTGAGCTGCTGACGGGCCGCCGAGCAGTGGACTTGAACCAGGGCCCAAACGATCAAAACCTTGTCCTACTGGTACGACATATATTGAACGATCGAAAAAAATTACGCAAAGTGATAGATCCAGAAATGAGTCGAAGTTCGTATACAATGGAATCTATAATCATATTTGCAAATTTGGCTTCACGTTGCGTCCGAACAGAGAGTAGTGAAAGACCAACAATGGCAGAATGTGTAAAGGAGCTTCAAATGATTATCTACACAAAGTTGCAAACTCGCAAGGCTTAA | 1083 | 42.84 | MMAFSLVSAWNKRRRQKKSSQLDHQIADPWIYRPVELWQLEDQTLQRPSKRHHGSAVFTFREMEDATCSFSDANLLGKGGFGRVYRGTLRSGEVVAIKKMEMPAFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHKGNLQDHLNGIGEAKMDWERRLKVALGAAKGLAYLHSSSAAGIPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLLVRHILNDRKKLRKVIDPEMSRSSYTMESIIIFANLASRCVRTESSERPTMAECVKELQMIIYTKLQTRKA | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 23652515 | 23658819 | + | Lsi03G012820.1 | Lsi03g01282 | 659032 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01282 | 360 | ProSiteProfiles | Protein kinase domain profile. | 70 | 351 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi03g01282 | 360 | CDD | STKc_IRAK | 76 | 348 | - | - | |
Lsi03g01282 | 360 | PIRSF | ILK | 40 | 359 | - | - | |
Lsi03g01282 | 360 | Pfam | Protein kinase domain | 72 | 345 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi03g01282 | 360 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524 | |
Lsi03g01282 | 360 | SUPERFAMILY | Protein kinase-like (PK-like) | 48 | 353 | IPR011009 | - | |
Lsi03g01282 | 360 | Gene3D | Transferase(Phosphotransferase) domain 1 | 149 | 359 | - | - | |
Lsi03g01282 | 360 | Gene3D | Phosphorylase Kinase; domain 1 | 36 | 148 | - | - | |
Lsi03g01282 | 360 | PANTHER | OS01G0750732 PROTEIN | 1 | 357 | - | - | |
Lsi03g01282 | 360 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 195 | 207 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi03g01282 | 360 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL28-RELATED | 1 | 357 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01282 | Lsi-Chr3:23652515 | Lsi05g01512 | Lsi-Chr5:22909461 | 3.68E-92 | dispersed | |
Lsi03g01282 | Lsi-Chr3:23652515 | Lsi03g02064 | Lsi-Chr3:31958333 | 1.30E-93 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83490 | PF00069 | Pkinase | 4.10E-50 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01282 | - | - | cmo:103502985 | 658.292 |