Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01283 CGAAGACTGATAATTACATCCACCTACCAGCATTCAAGAGAGATGCAACCAAAAATGACTAAGGGAAATGGGAACTGCCCGTTTTGTTCCGATCATTGTTTTAGTGAAGAAGGGTGTGACCAAGTTGTGTGCGTGGTGGGAGAGAAATTATGGGGACGATTTTGGCGGTTTCAGTCGTTCAAACGCTGCTATTTTTGGCTTTCTTCTACTTGGCCGCTTCCTATACTGATTCCCACGATTGTAAAGGGTGGAAGCGACCCTTGTAAGCTTCATGCTCATGTTGTTGGTGCAGCTTCAGTTCTACAATCCTTGAAAGATGGATGGCAAAATACACCACCAAACTGGGGAACAACAAATGATCCATGTGGAGCTCCATGGGAAGGAGTAATTTGCAAAAACTCAAGAGTAGTTGCATTGAAATTATCAAGTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGATCATTGGACCTCGCAGCCAATCGAGACCTCATTGGTTCAATCTCTTCGGCTCTAGGGAATTTGTTGAAATTAGAGACCTTGATCCTTTCTACGTGTGGATTTAGTGGCAATATTCCGGAAGAATTGGGCAATCTTCCTGAGTTAACCTTCTTGTCTTTATATTCTAACAACTTCACTGGTACTATACCGGCAACTCTGGGAAAACTCTCTAATCTATACTGGCTAGACCTGGCAGATAATCAATTGACTGGTGCTCTCCCAGTTTCCACTTCCGGATCTTCGGGTTTAGATCAACTTCTTAAGGCTAAACATTTTCATTTCAGCAAAAACCAGTTATCAGGTACCATTCCACCTGAACTTTTTCGCTCTGAGATGGTATTATTACACATATTATTTGATGGAAATAATTTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGATTCTTCGACTTGATCGAAATTCTTTAACAGGAAATGTCCCATCAACTCTAAGCAATCTAGTAAATGTGAATGAATTGCATTTAGCCAACAATAAGCTAACAGGTCCACTACCAAACTTAACTCAAATGAGCTCATTAAATTACGTGGATCTTAGTAACAACTCATTTAGCTCATCAGTAGCTCCGGAATGGTTATCAAATGTACAATCTCTCACCACTCTTGTTGTTGAATATGGATCAATACGGGGAAATCTGCCAGAAGGAATCTTTAGCTTACCACATATACAACAAGTAAAACTGAAGAATAATGCATTTAGTGGGACATTAAATATGGGTGATAGCATCAGCCAACGGTTGCAGCTAGTCGATTTGCAAAATAACAATATTTCCTCAGTTACCTCTTCGGGATATACTAACAATTTGATGCTGACAGGAAATCCTGTGTGTGATGCTAATTTCCTCTCAAAGACGAACTACTGCCAACTTCAACAGCAACAAGCAAAGCCCTATACTACCAGCCTTGTCAACTGTGGCATTAAGTCATGTCCTTCTGATGAGAAGCTGAACCCTCAGAGTTGTGAATGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCCTCTTTCCGGGAATTGTCCAATATAACTCTGTTTCACTCATTGGAAACGAGCCTTTTGGAAAAATTCAACCGAACGCCTTTTATTGGAAACCCTTTCTTTAATGCTGATGATTATCTTCAGATGCAGCTTGCACTTTTTCCAGCCAATGATAAGTATTTCAACAGGGAAGACATTCAGAGGATTGGTTTTGATTTGCACAGTCAAAATTACAAACCTCCCGACAAGTTTGGGCCATATTATTTCTTTGCGTCTCCTTATCCTTTTTCAGCCATCGATAAGGGATCAACTTCAACCAACACCGGAGTGGTAATTGGCATAGCTGTTGGTTGTGCCTTTCTTGTTCTATGCTTCATTGGAATTGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCAAGCCAAATGCTTTCTGGGTGCCAAGTGGAAACGATAGTGGAAGCGCACCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAGATAATTTCTCCACCAGTAATGTGATAGGATCCGGAGGATTTGGCATGGTATACAGAGGAATGCTGGTGGATGGAAAAGTAGTTGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTGGCCTTGAGTTCAAGACGGAAATTGAGCTTCTTTCACGAGTTCATCACAAGAATCTTCTAGGCCTAGTGGGATTTTGTTCCGAACACGGAGAACAGATTCTTGTTTATGAATTCATGCCTAATGGGACACTTAGACAGAGCCTAGCTGTAAGAGTGGAGAGTCTTGCCTCTTGTATAGTTGGGCTTCTGTTGAGGTTTTATTTATCCCCGGCCGAGTGTGCCGCTCTTGGCAAAGCCTGTTTTCAAAAAGAACTACAAGAAGAAAGGGAAAAAACATGGGAAACAATAATTATTTTGAAAAGGCTTCGTATCGCACTGGGGTCGGCCAGAGGACTTACTTACTTACACGAGCTTGCTAATCCTCCCATAATTCATAGAGATGTTAAGTCCACCAACATTTTACTAGATGAACGTTTAAATGCAAAGGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGTAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTATTTGGATCCTGAATATTACATGAGTCAACAATTGACAGAGAAAAGTGACGTGTACAGCTTTGGAATAGTTATGTTGGAATTACTAACTGCTAAGCTGCCAATTGAAAAGGGGAAGTACATAGTTCGTGAGGTGCGTATGTCGATGAATAAGAGTGATGAGGAATATTATGGTTTGAAGCATTTGATGGATGCAACCATAATCGATAATACGACAAATCTTATCGGGTTTGGAAAGTACTTAGAGTTGGCGATGCAATGTGTTGAAGAAGCAGCTGCAGACCGTCCCACAATGAGTGAAGTGGTTAAGGCAATTGAGAACATTTTGCAGAATGATGGAATAAATACAACCTCAACATCAGCATCCACATCTGCCACAGACTTTGGGACTTCCAAAACTGCTTCTAAACATCCTTATAATGATGCTTTACAGAAAGAGAGTGTCAACAGGAATAGCCAATGA 3156 41.0 RRLIITSTYQHSREMQPKMTKGNGNCPFCSDHCFSEEGCDQVVCVVGEKLWGRFWRFQSFKRCYFWLSSTWPLPILIPTIVKGGSDPCKLHAHVVGAASVLQSLKDGWQNTPPNWGTTNDPCGAPWEGVICKNSRVVALKLSSMGLKGKLGGDIGGLTELRSLDLAANRDLIGSISSALGNLLKLETLILSTCGFSGNIPEELGNLPELTFLSLYSNNFTGTIPATLGKLSNLYWLDLADNQLTGALPVSTSGSSGLDQLLKAKHFHFSKNQLSGTIPPELFRSEMVLLHILFDGNNFSGSIPPTLGLVKTLEILRLDRNSLTGNVPSTLSNLVNVNELHLANNKLTGPLPNLTQMSSLNYVDLSNNSFSSSVAPEWLSNVQSLTTLVVEYGSIRGNLPEGIFSLPHIQQVKLKNNAFSGTLNMGDSISQRLQLVDLQNNNISSVTSSGYTNNLMLTGNPVCDANFLSKTNYCQLQQQQAKPYTTSLVNCGIKSCPSDEKLNPQSCECAYPYEGTLYFRGPSFRELSNITLFHSLETSLLEKFNRTPFIGNPFFNADDYLQMQLALFPANDKYFNREDIQRIGFDLHSQNYKPPDKFGPYYFFASPYPFSAIDKGSTSTNTGVVIGIAVGCAFLVLCFIGIGTYAIQQKRRAEKAKPNAFWVPSGNDSGSAPQLKGARWFSYDELKKCTDNFSTSNVIGSGGFGMVYRGMLVDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCSEHGEQILVYEFMPNGTLRQSLAVRVESLASCIVGLLLRFYLSPAECAALGKACFQKELQEEREKTWETIIILKRLRIALGSARGLTYLHELANPPIIHRDVKSTNILLDERLNAKVADFGLSKLVSDSVKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGIVMLELLTAKLPIEKGKYIVREVRMSMNKSDEEYYGLKHLMDATIIDNTTNLIGFGKYLELAMQCVEEAAADRPTMSEVVKAIENILQNDGINTTSTSASTSATDFGTSKTASKHPYNDALQKESVNRNSQ 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23660770 23667999 - Lsi03G012830.1 Lsi03g01283 659033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01283 1051 Gene3D Ribonuclease Inhibitor 289 352 IPR032675 -
Lsi03g01283 1051 Gene3D Ribonuclease Inhibitor 98 288 IPR032675 -
Lsi03g01283 1051 ProSitePatterns Serine/Threonine protein kinases active-site signature. 852 864 IPR008271 GO:0004672|GO:0006468
Lsi03g01283 1051 MobiDBLite consensus disorder prediction 1013 1051 - -
Lsi03g01283 1051 SMART serkin_6 692 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01283 1051 Gene3D Phosphorylase Kinase; domain 1 664 767 - -
Lsi03g01283 1051 SUPERFAMILY Protein kinase-like (PK-like) 677 1017 IPR011009 -
Lsi03g01283 1051 Gene3D Transferase(Phosphotransferase) domain 1 810 1034 - -
Lsi03g01283 1051 PANTHER LRR RECEPTOR-LIKE KINASE 97 780 - -
Lsi03g01283 1051 PANTHER LRR RECEPTOR-LIKE KINASE 828 1036 - -
Lsi03g01283 1051 CDD STKc_IRAK 698 1006 - -
Lsi03g01283 1051 Gene3D Ribonuclease Inhibitor 353 495 IPR032675 -
Lsi03g01283 1051 SUPERFAMILY L domain-like 109 370 - -
Lsi03g01283 1051 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 97 780 - -
Lsi03g01283 1051 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 828 1036 - -
Lsi03g01283 1051 ProSiteProfiles Protein kinase domain profile. 692 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01283 1051 Pfam Protein tyrosine and serine/threonine kinase 694 1002 IPR001245 GO:0004672|GO:0006468
Lsi03g01283 1051 SUPERFAMILY L domain-like 353 461 - -
Lsi03g01283 1051 ProSitePatterns Protein kinases ATP-binding region signature. 698 720 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01199 Lsi-Chr2:15311779 Lsi03g01283 Lsi-Chr3:23660770 7.63E-92 dispersed
Lsi03g01283 Lsi-Chr3:23660770 Lsi03g02297 Lsi-Chr3:33825145 3.73E-07 dispersed
Lsi03g01283 Lsi-Chr3:23660770 Lsi08g01054 Lsi-Chr8:19156987 5.98E-06 transposed
Lsi03g01283 Lsi-Chr3:23660770 Lsi04g02307 Lsi-Chr4:30266100 9.34E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83491 PF07714 PK_Tyr_Ser-Thr 1.30E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01283 - - csv:101207906 1674.45