Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01290 ATGTACCATCATCAGCATAGAGGGAAGAGCATTCATTCGTCAGAGAGGCATATGTTTTTACAAGGTGGGAATGGGCCTGGAGATTCAGGACTTGTTCTTTCTACTGATGCTAAGCCAAGGCTTAAATGGACTCCTGATTTGCATGATCGTTTTGTTGAAGCTGTCAATCAGCTGGGAGGGGCTGACAAGGCCACTCCTAAAACTGTGATGAAAATCATGGGCATTCCTGGACTTACTTTATACCACTTGAAAAGCCATCTTCAGAAATACAGGCTAAGCAAGAATTTGCATGGACAAGCAAATGGTGGAAGTGGAACAAATAAAACTGTTGAAATAGGTATGGGTTGGCGTGTAGGAACAGTGGCTGTTTCTGTAGACCAGAGATTGGCAGAGGGAAATGGAGCAGCTCGCACTAACAATATAGTCGTCGCCCCACAGCCCTCTTCCCAGTCCAACAACCTTCAAATAAGTGAAACTATACAGATGCAGATCGAAGTGCAAAAAAGGTTACACGAGCAACTCGAGCTGAGAATAGAAGCACAAGGGAAGTATCTCCAAACAGTATTGGAGAAAGCACAAGAAACACTAGGAAGACAAAACTTAGGGACAGTAGGACTTGAAGCCGCCAAAGTGCAGCTCTCAGAATTGGTCTCTAAAGTTTCCACTCAATGTCTAACCGCAGCATTTCCAGAGCTACACCACCAAAGCCAAAGCCAAAGCCAAAGGCTATGTCCTCAACAAAGCCAGCCCCCTGACTGTTCAATGGACAGTTGCTTGACCTCCTGTGAGGGCGGCTCCAAGGACCACCAAGACCAACAAGTCCTGCTCTACAATAGCCACTTAGCCCTCCGACCCTACGTGGATCGTGGCTCGTCCGGTGCCGAGCACCTTCATGGGCTGTCCATGAGCATTGGGCTGGTGCAGGGGGAGAAGGCCGGGGAAGGGTATAATGGGTATTCGCCATCGGAGGGACAGAGATTTGGGAGTAAAAGAAAGGAGGCAGTGGAAAAAGAGAAAGTGGTGGAGACTGGGTTTAGATATAGAATGGACTTGAATGCTGGAGAGGATCAACTAATTAGTAATAATGATCATGGGGCTTCTACTACTTGCAAGATGTTTGATCTTAATGGCTTTAGT 1137 46.88 MYHHQHRGKSIHSSERHMFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNLHGQANGGSGTNKTVEIGMGWRVGTVAVSVDQRLAEGNGAARTNNIVVAPQPSSQSNNLQISETIQMQIEVQKRLHEQLELRIEAQGKYLQTVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHHQSQSQSQRLCPQQSQPPDCSMDSCLTSCEGGSKDHQDQQVLLYNSHLALRPYVDRGSSGAEHLHGLSMSIGLVQGEKAGEGYNGYSPSEGQRFGSKRKEAVEKEKVVETGFRYRMDLNAGEDQLISNNDHGASTTCKMFDLNGFS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23709912 23713273 - Lsi03G012900.1 Lsi03g01290 659040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01290 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 379 IPR044848 GO:0003700
Lsi03g01290 379 Pfam Myb-like DNA-binding domain 40 91 IPR001005 -
Lsi03g01290 379 Pfam MYB-CC type transfactor, LHEQLE motif 154 195 IPR025756 -
Lsi03g01290 379 MobiDBLite consensus disorder prediction 1 26 - -
Lsi03g01290 379 Gene3D - 37 95 - -
Lsi03g01290 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 95 IPR017930 -
Lsi03g01290 379 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Lsi03g01290 379 PANTHER MYB-RELATED PROTEIN 2 4 379 - -
Lsi03g01290 379 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 38 93 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01290 - - - csv:101206445 600.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01999 Lsi-Chr1:26783102 Lsi03g01290 Lsi-Chr3:23709912 1.14E-20 dispersed
Lsi03g01290 Lsi-Chr3:23709912 Lsi05g01838 Lsi-Chr5:25663614 1.37E-47 dispersed
Lsi11g00045 Lsi-Chr11:511851 Lsi03g01290 Lsi-Chr3:23709912 1.02E-15 dispersed
Lsi11g00973 Lsi-Chr11:15600557 Lsi03g01290 Lsi-Chr3:23709912 1.01E-19 dispersed
Lsi11g01062 Lsi-Chr11:18452240 Lsi03g01290 Lsi-Chr3:23709912 4.89E-10 dispersed
Lsi03g01290 Lsi-Chr3:23709912 Lsi11g01586 Lsi-Chr11:24259033 3.00E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi04g00286 . 19 257 G2-like Transcription Factor Family AT1G25550 54.9 6.3e-54 208.0
Lsi08g00393 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 3.8e-51 198.7
Lsi02g01341 . 1 269 G2-like Transcription Factor Family AT3G46640 52.2 1.5e-62 236.9
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT5G05090 55.6 7.9e-70 260.8
Lsi05g01838 . 7 314 G2-like Transcription Factor Family AT4G13640 53.6 6.1e-55 211.5
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi11g01586 . 1 387 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-81 299.7
Lsi10g01509 . 1 166 G2-like Transcription Factor Family AT1G79430 71.0 3.1e-61 232.6
Lsi03g01290 . 70 292 G2-like Transcription Factor Family AT5G18240 53.3 6.4e-50 194.9
Lsi01g00520 . 84 343 G2-like Transcription Factor Family AT2G01060 56.8 2.5e-51 199.1
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT3G10760 56.9 5.6e-81 298.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003788 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 5 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25006 PF00249 Myb_DNA-binding 5.40E-08 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01290 Lsi_Chr03 FPKM 8.195988 9.180195 2.531255 3.297652 3.621233 2.22892 3.230205 0.0 0.0 0.0