Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01290 ATGTACCATCATCAGCATAGAGGGAAGAGCATTCATTCGTCAGAGAGGCATATGTTTTTACAAGGTGGGAATGGGCCTGGAGATTCAGGACTTGTTCTTTCTACTGATGCTAAGCCAAGGCTTAAATGGACTCCTGATTTGCATGATCGTTTTGTTGAAGCTGTCAATCAGCTGGGAGGGGCTGACAAGGCCACTCCTAAAACTGTGATGAAAATCATGGGCATTCCTGGACTTACTTTATACCACTTGAAAAGCCATCTTCAGAAATACAGGCTAAGCAAGAATTTGCATGGACAAGCAAATGGTGGAAGTGGAACAAATAAAACTGTTGAAATAGGTATGGGTTGGCGTGTAGGAACAGTGGCTGTTTCTGTAGACCAGAGATTGGCAGAGGGAAATGGAGCAGCTCGCACTAACAATATAGTCGTCGCCCCACAGCCCTCTTCCCAGTCCAACAACCTTCAAATAAGTGAAACTATACAGATGCAGATCGAAGTGCAAAAAAGGTTACACGAGCAACTCGAGCTGAGAATAGAAGCACAAGGGAAGTATCTCCAAACAGTATTGGAGAAAGCACAAGAAACACTAGGAAGACAAAACTTAGGGACAGTAGGACTTGAAGCCGCCAAAGTGCAGCTCTCAGAATTGGTCTCTAAAGTTTCCACTCAATGTCTAACCGCAGCATTTCCAGAGCTACACCACCAAAGCCAAAGCCAAAGCCAAAGGCTATGTCCTCAACAAAGCCAGCCCCCTGACTGTTCAATGGACAGTTGCTTGACCTCCTGTGAGGGCGGCTCCAAGGACCACCAAGACCAACAAGTCCTGCTCTACAATAGCCACTTAGCCCTCCGACCCTACGTGGATCGTGGCTCGTCCGGTGCCGAGCACCTTCATGGGCTGTCCATGAGCATTGGGCTGGTGCAGGGGGAGAAGGCCGGGGAAGGGTATAATGGGTATTCGCCATCGGAGGGACAGAGATTTGGGAGTAAAAGAAAGGAGGCAGTGGAAAAAGAGAAAGTGGTGGAGACTGGGTTTAGATATAGAATGGACTTGAATGCTGGAGAGGATCAACTAATTAGTAATAATGATCATGGGGCTTCTACTACTTGCAAGATGTTTGATCTTAATGGCTTTAGT 1137 46.88 MYHHQHRGKSIHSSERHMFLQGGNGPGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNLHGQANGGSGTNKTVEIGMGWRVGTVAVSVDQRLAEGNGAARTNNIVVAPQPSSQSNNLQISETIQMQIEVQKRLHEQLELRIEAQGKYLQTVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHHQSQSQSQRLCPQQSQPPDCSMDSCLTSCEGGSKDHQDQQVLLYNSHLALRPYVDRGSSGAEHLHGLSMSIGLVQGEKAGEGYNGYSPSEGQRFGSKRKEAVEKEKVVETGFRYRMDLNAGEDQLISNNDHGASTTCKMFDLNGFS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23709912 23713273 - Lsi03G012900.1 Lsi03g01290 659040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01290 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 379 IPR044848 GO:0003700
Lsi03g01290 379 Pfam Myb-like DNA-binding domain 40 91 IPR001005 -
Lsi03g01290 379 Pfam MYB-CC type transfactor, LHEQLE motif 154 195 IPR025756 -
Lsi03g01290 379 MobiDBLite consensus disorder prediction 1 26 - -
Lsi03g01290 379 Gene3D - 37 95 - -
Lsi03g01290 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 95 IPR017930 -
Lsi03g01290 379 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Lsi03g01290 379 PANTHER MYB-RELATED PROTEIN 2 4 379 - -
Lsi03g01290 379 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 38 93 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01999 Lsi-Chr1:26783102 Lsi03g01290 Lsi-Chr3:23709912 1.14E-20 dispersed
Lsi03g01290 Lsi-Chr3:23709912 Lsi05g01838 Lsi-Chr5:25663614 1.37E-47 dispersed
Lsi11g00045 Lsi-Chr11:511851 Lsi03g01290 Lsi-Chr3:23709912 1.02E-15 dispersed
Lsi11g00973 Lsi-Chr11:15600557 Lsi03g01290 Lsi-Chr3:23709912 1.01E-19 dispersed
Lsi11g01062 Lsi-Chr11:18452240 Lsi03g01290 Lsi-Chr3:23709912 4.89E-10 dispersed
Lsi03g01290 Lsi-Chr3:23709912 Lsi11g01586 Lsi-Chr11:24259033 3.00E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25006 PF00249 Myb_DNA-binding 5.40E-08 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01290 - - csv:101206445 600.897