Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01306 ATGACCTCCCAAGCAATGGAGCTTAACATCAACCTATCTAAATCTGAACACAAGTTTGCATTTTGGTACACTCGTCGAACACCTGGAGTTCGGACTCAAACGTCATATGAGGACAACATAAAAAGGATCGTGGACTTTAGCTCGGTTGAAGGTTTTTGGGTAAGCTATTGCCATTTGGCTCGTCCTTCTTCATTGCCAAGCCCAACAGATCTGCATCTCTTTAAGGAAGGAATCCGTCCCCTCTGGGAGGATTCTGCCAACTGCAATGGTGGAAAGTGGATAATACGATTTAAGAAAGTTGTATCTGGGCGATTTTGGGAAGATTTGGTTCTTGCATTAGTGGGCGACCAACTTGATTTTGGTGATAACATATGTGGTGCCGTGCTTAGCATTCGTTTCAATGAGGATATTTTGAGTGTCTGGAACCGCAATGCATCTGATCATCAGGCGGTGATGGGTCTGCGAGATTCAATCAAAAGGCACTTAAAGCTCCCGCACGGGTATGTAATGGAATACAAACCCCACGATGCGTCTCTGCGTGATAACTCGTCATACAGAAACACATGGTTGCGAGGGTGA 579 45.25 MTSQAMELNINLSKSEHKFAFWYTRRTPGVRTQTSYEDNIKRIVDFSSVEGFWVSYCHLARPSSLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDFGDNICGAVLSIRFNEDILSVWNRNASDHQAVMGLRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRG 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23884420 23886816 + Lsi03G013060.1 Lsi03g01306 659056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01306 192 PANTHER BNAA10G16710D PROTEIN 6 192 - -
Lsi03g01306 192 Gene3D RNA Cap, Translation Initiation Factor Eif4e 2 185 IPR023398 -
Lsi03g01306 192 ProSitePatterns Eukaryotic initiation factor 4E signature. 70 93 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Lsi03g01306 192 Pfam Eukaryotic initiation factor 4E 16 172 IPR001040 GO:0003723|GO:0003743|GO:0006413
Lsi03g01306 192 SUPERFAMILY eIF4e-like 16 188 IPR023398 -
Lsi03g01306 192 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 6 192 IPR001040 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01306 Lsi-Chr3:23884420 Lsi09g01200 Lsi-Chr9:19231830 1.86E-30 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01306 K03259 - csv:101204290 375.555