Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01319 ATGATGTTGCTTTATTTCCAAGCTGCAAGAAACCTTAGCGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGAATGGAAAAAGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGACCAAAGTTGAAGAACTCGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACTGCAACTACTCTTTCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCGGGAAGTTGTTGAGAGACGAGTTTTCACAGTCACGGGTGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGATAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGACATGGCAGTATTGGTGGATGCACAAGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATGGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGCATGTGGTGGAGAAATATTTGGTCCTTTACATGTTATAAGTGCTAAAGAGCTTGAATGA 825 42.06 MMLLYFQAARNLSDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKTKVEELDRENLANRQRPGCGKGSGVDRSRTATTLSLKKKLKDKMTEFQILREKIHQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCMAIIILLIIVVVIVVGVLKPWNNACGGEIFGPLHVISAKELE 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23988017 23997598 - Lsi03G013190.1 Lsi03g01319 659069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01319 274 CDD SynN 1 145 IPR006011 GO:0016020
Lsi03g01319 274 SMART SynN_4 1 109 IPR006011 GO:0016020
Lsi03g01319 274 Gene3D - 7 116 - -
Lsi03g01319 274 SUPERFAMILY t-snare proteins 20 213 IPR010989 GO:0016020|GO:0016192
Lsi03g01319 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 158 220 IPR000727 -
Lsi03g01319 274 ProSitePatterns Syntaxin / epimorphin family signature. 164 203 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lsi03g01319 274 PANTHER - 10 251 - -
Lsi03g01319 274 PANTHER SYNTAXIN 10 251 IPR045242 -
Lsi03g01319 274 SMART tSNARE_6 153 220 IPR000727 -
Lsi03g01319 274 Pfam SNARE domain 194 246 IPR000727 -
Lsi03g01319 274 Gene3D - 147 251 - -
Lsi03g01319 274 Coils Coil 161 181 - -
Lsi03g01319 274 Pfam Syntaxin 9 193 IPR006011 GO:0016020
Lsi03g01319 274 CDD SNARE_syntaxin1-like 157 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01319 Lsi-Chr3:23988017 Lsi10g00145 Lsi-Chr10:2351402 1.11E-09 dispersed
Lsi03g01319 Lsi-Chr3:23988017 Lsi01g01181 Lsi-Chr1:10035743 2.13E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01319 K08486 - csv:101203075 420.239