Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01333 ATGATGCAGCCGGATCAAAGCTCTGAGCTTTACAGATTCCTGGCACAGAACGGAGCGTTCAGCCTGGGCGGCGGCGGCGGCGGTGGATCCTGCGGCTTTCCGGCGAGCCAAAGCATGTCGAGCTCTTGCTCTTATTACCCTTTGGATAAGACACCGGCGGCGGCCGCCAGTGAGGCAGCGGTGCCGTCGCCACACGACAGAGCTCTGGCCGCCCTTAAGAATCACAAGGAAGCTGAGAAGCGGAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGTACTCTTCTTCCTTGTAATTCTAAGAGAAGTAAATACTTCATTAAGAAGGGAAAACAGCTAAAGAACGAGACGTCGGAGATCACGGAGCTCGAAAGCTTTCCTTCGGAGACCGACGAAATCAGTGTGCTTTCTGGGGAGCAGTCGGAGGATGGAAGGCTTGTGTTCAAGGCATCATTTTGTTGCGAGGACCGCTCCGACCTCATCCCGGACCTCAACGACATCCTTAATTCTCTCCACCTCAAAACCCTTAGGGCTGACATCGTCACGGTCGGTGGCCGGATCCGTAACGTCCTGCTTATCGCCGCCAATGACCACCACAGCGTTGAGTCCGTTCATTTCCTTCAAAATGCCTTGAAATCTCTTCTTGAACGGTCCAATTCTAACCTTACATCCAAGAGGAGGCGTCTTGTACTTCACCACAAATAA 708 52.54 MMQPDQSSELYRFLAQNGAFSLGGGGGGGSCGFPASQSMSSSCSYYPLDKTPAAAASEAAVPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKRSKYFIKKGKQLKNETSEITELESFPSETDEISVLSGEQSEDGRLVFKASFCCEDRSDLIPDLNDILNSLHLKTLRADIVTVGGRIRNVLLIAANDHHSVESVHFLQNALKSLLERSNSNLTSKRRRLVLHHK 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24194477 24196752 - Lsi03G013330.1 Lsi03g01333 659083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01333 235 Gene3D - 73 135 IPR036638 GO:0046983
Lsi03g01333 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 124 IPR011598 GO:0046983
Lsi03g01333 235 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 3 233 - -
Lsi03g01333 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 108 IPR036638 GO:0046983
Lsi03g01333 235 Pfam Helix-loop-helix DNA-binding domain 74 105 IPR011598 GO:0046983
Lsi03g01333 235 PANTHER TRANSCRIPTION FACTOR BHLH30 3 233 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01333 Lsi-Chr3:24194477 Lsi09g01016 Lsi-Chr9:14014301 1.60E-39 dispersed
Lsi03g01333 Lsi-Chr3:24194477 Lsi02g00800 Lsi-Chr2:7392591 4.46E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25010 PF00010 HLH 1.20E-08 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01333 - K22484 csv:101220675 343.199