Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01347 ATGGGTTCTGGTAATGGGTTTTATTCCACTGGTGAATTCAATTTGGATGCCAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCAAAAATTGGGGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAATACAAAAATCAGATTGTGGCTATCAAAATGGTGGGTAAAGGAGATACTCCTGAGAGGATGGCCAGAAGAGAATCTCGGTTTGCCAGAGAGTTTATTGGTGCTTGCAAAGAACCTATGATGGTTATAGTGACTGAATTACTCACAGGTGGCACATTACGCAAATATCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTAGATGTGGCGATCGGGTTTGCGCTTGATATTGCTCGTGCAATGGAGTGTTTACACTCCCATGGAATTATTCACCGTGACCTTAAACCAGAAAACTTGATATTGACTGCAGACCATAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACATATAGGTGGATGGCTCCAGAGCTCTATAGCACAGTCACTTTAAAGCATGGAGATAAAAAGCATTATAATCATAAAGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTTATCCTTAACAGGTTGCCTTTCGAAGGCATGTCGAATTTACAGGCGGCGTATGCAGCTGCTTTCAAGAACATGAGGCCCAGTGCTGAAAACCTTCCAGAGGACTTAGCTTTAATAGTGACATCATGTTGGAGAGAAGATCCAAATACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTGCAATCCCTCTCTAGAATATCACCACGAGCACCCGTGATCCCACCTCGGATATGTGTTTCTGAAAATGTCGTCATGCCACCTGACTCCCCCTGTACAAATTCCTTGATGGCTGTCAGACATGGCTCAGGGGAAGCCTCACACAGCATGATTGAAGAAACCCCAAAAAGCTCCTTCTTCTGCTTTAACAAGTGTTACTGA 1017 43.36 MGSGNGFYSTGEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERMARRESRFAREFIGACKEPMMVIVTELLTGGTLRKYLLNLRPRSLELDVAIGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSRISPRAPVIPPRICVSENVVMPPDSPCTNSLMAVRHGSGEASHSMIEETPKSSFFCFNKCY 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24355166 24358142 - Lsi03G013470.1 Lsi03g01347 659097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01347 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lsi03g01347 338 Gene3D Transferase(Phosphotransferase) domain 1 93 283 - -
Lsi03g01347 338 ProSiteProfiles Protein kinase domain profile. 26 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01347 338 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524
Lsi03g01347 338 SMART serkin_6 26 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01347 338 Pfam Protein tyrosine and serine/threonine kinase 29 272 IPR001245 GO:0004672|GO:0006468
Lsi03g01347 338 Gene3D Phosphorylase Kinase; domain 1 14 92 - -
Lsi03g01347 338 PANTHER SERINE-THREONINE PROTEIN KINASE 1 315 - -
Lsi03g01347 338 PRINTS Tyrosine kinase catalytic domain signature 88 101 IPR001245 GO:0004672|GO:0006468
Lsi03g01347 338 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Lsi03g01347 338 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672|GO:0006468
Lsi03g01347 338 PRINTS Tyrosine kinase catalytic domain signature 126 144 IPR001245 GO:0004672|GO:0006468
Lsi03g01347 338 SUPERFAMILY Protein kinase-like (PK-like) 17 301 IPR011009 -
Lsi03g01347 338 PANTHER PROTEIN KINASE ATN1 1 315 - -
Lsi03g01347 338 CDD STKc_MAP3K-like 32 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01347 Lsi-Chr3:24355166 Lsi07g01075 Lsi-Chr7:16102866 4.98E-56 dispersed
Lsi03g02273 Lsi-Chr3:33657490 Lsi03g01347 Lsi-Chr3:24355166 4.74E-142 transposed
Lsi06g01595 Lsi-Chr6:26332348 Lsi03g01347 Lsi-Chr3:24355166 0 transposed
Lsi02g01597 Lsi-Chr2:21848918 Lsi03g01347 Lsi-Chr3:24355166 1.67E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83493 PF07714 PK_Tyr_Ser-Thr 1.40E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01347 - - csv:101219563 660.988