Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01351 ATGAGGTGTTTTGATATTGCTTTGATTGTGAATCAAGGTTCACTGCTTCAGTTTCGGGTCAGCCATCAACAGATCTGGCCTGAGAGTGTGCTTGAGCCGGAGCTGCTGATGGAGCCACTTGTTGATGGTATGAGTTCTTTACTGAAAACTCAGAACCCGACATCTACATCAAGGAATCTCGATTCATCTCGCCAACCGTCTCCCAAACAGTCTAGGAATGAAGCAACTTCCTCGACGTCCTACCTTACGTCTCAAAATTGTGCCAAGAAGCCCCTTCGCCATCCAAATGGTTCTTCTGTAAGTAGTAGAAAACATCCTACCAATTTGAACGTGCAGCTTGATGGTTTAACTGATGTGAAAAAACATACACACGTTTCCAATAAGGGGAAATCCGAGCTTGTAAACCCGACAGATAGTTCATATAAATCAACTGAAAGATCTTTTCAGAAGAAGGTTCCTTTGGAGGGAGGTGGAGCAGAACCTCTTGTGAAGCATATTATCGATGATTCTAAGGATTGTTGTTCAAGTGGCTCAGAAGAATCTGGAAATCAAGTATTGAACGCATCGAAAGGAGCTGCCACACAAATAATTGATCAACAAAAGTCTCAGCCAGCTGAAATATCTTGTCCAAGTCCTCAGAACAGCTTATATTCCACGACTTTATATGCAGAGGCCAAACAAAGTTTCTCAAACACAGAAGTCAGTGAATGTGCAAGCAGCATTGAAAAGTCTTGTGAAAGCATTGACATCACAAATTCCCTTGATCTTGACAAAAGCAGGAAAACAAGTGTTTACCGAGGCAGCACTGGCAGTGATATCAGTGATGAAAGCAACTCAAGTAGTTTAAGCAATGCCATGTATAAGCCTCATAAGGCAAATGATACAAGATGGGAAGCAATGCAAGTCGTGAGATCTCATGATGGGATGTTAGGACTTAACCATTTCCGCTTGCTGCGAAGACTGGGATGTGGCGACATTGGCAGTGTCTATCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCGATGAAGGTTATGGATAAGGCTGCTTTGGCAAGTAGGAAGAAGCTTCTAAGGGCTCAGACCGAACGTGAGATATTGCAATCTCTGGATCATCCTTTCCTGCCAACTTTGTATACACACTTTGAGACAGAGAAGTTCTCTTGTTTGGTAATGGAGTTTTGCCCTGGGGGCGATTTGCATGCGCTTAGGCAGAGACAGCCTGGAAAATTTTTTCCAGAGCATGCTGCAAGGTCCGGAATTGTTTTCTTATCCTTTAGCTTTTATCTTGCTTTCACTCTAATAACCGAACAGAACGTTTGCTATCTCTATTTAACATCTATTATGAAGATATCAAATATGAACTGCCTAATATGGCACAGGTGGAAAGATTTCTGCTCAACCTTTCCACAATTCTATGTGGCTGAAGTTCTCCTTGCTTTGGAGTATCTGCACATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAACGTGTTAGTGAGAGACGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGCGCAGTCTCCCCGACACTTGTTAAGTCATCGAACTCGGGTTTAGAAGCTAAAAGCTCGGGTTACTGTGCTCAGCCTGCCTGCATTGAGCCAACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCATGTTTTACACCTCGCTTCCTTAGCAGACACAGGAAAGAAAAGAAGTCCAAACCGAAGAGTGAAGTATATCATCAAGTGAGCCCTTTACCGGAGCTCATTGCCGAACCCACGAGTGCAAGATCAATGTCCTTTGTTGGTACACACGAGTACCTGGCACCTGAAATCATAAAAGGTGAAGGCCATGGCAGTGCCGTGGACTGGTGGACTTTCGGGATCTTTCTTTACGAGCTTTTGTTCGGTAGAACTCCATTCAAAGGGGCTGGGAACCGTGCTACTTTGTTTAATGTGGTTGGTCAGCCATTGAGATTTCCTGAGTCTCCTTCTGTGAGCTTTGCAGCAAGGGACTTGATCCGAGGTTTGCTTGTAAAAGAACCACAGCATCGTCTCGCTTATAGGCGTGGCGCTACCGAGATCAAGCAACATCCATTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGCGCCAATCCTCCCGAGGTGCCAAGAGTAGATGTCATTGATTTCTCTTCAAGGATGGAGACACCACATGCACCGGCAGGCGAAAAGATGCCGGGAGTCGATGTGAAGCCTTCAGGTAATTATTTAGAGATCGACTTCTTTTGA 2283 44.46 MRCFDIALIVNQGSLLQFRVSHQQIWPESVLEPELLMEPLVDGMSSLLKTQNPTSTSRNLDSSRQPSPKQSRNEATSSTSYLTSQNCAKKPLRHPNGSSVSSRKHPTNLNVQLDGLTDVKKHTHVSNKGKSELVNPTDSSYKSTERSFQKKVPLEGGGAEPLVKHIIDDSKDCCSSGSEESGNQVLNASKGAATQIIDQQKSQPAEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIEKSCESIDITNSLDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARSGIVFLSFSFYLAFTLITEQNVCYLYLTSIMKISNMNCLIWHRWKDFCSTFPQFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNSGLEAKSSGYCAQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDVIDFSSRMETPHAPAGEKMPGVDVKPSGNYLEIDFF 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24384562 24387612 - Lsi03G013510.1 Lsi03g01351 659101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01351 760 ProSiteProfiles Protein kinase domain profile. 315 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01351 760 CDD STKc_phototropin_like 314 727 - -
Lsi03g01351 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Lsi03g01351 760 SUPERFAMILY Protein kinase-like (PK-like) 290 730 IPR011009 -
Lsi03g01351 760 Gene3D Transferase(Phosphotransferase) domain 1 453 517 - -
Lsi03g01351 760 Gene3D Transferase(Phosphotransferase) domain 1 599 721 - -
Lsi03g01351 760 Pfam Protein tyrosine and serine/threonine kinase 317 528 IPR001245 GO:0004672|GO:0006468
Lsi03g01351 760 MobiDBLite consensus disorder prediction 129 143 - -
Lsi03g01351 760 Gene3D Phosphorylase Kinase; domain 1 309 421 - -
Lsi03g01351 760 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 470 760 - -
Lsi03g01351 760 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 50 426 - -
Lsi03g01351 760 Pfam Protein kinase domain 601 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01351 760 SMART serkin_6 315 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01351 760 Gene3D Phosphorylase Kinase; domain 1 441 452 - -
Lsi03g01351 760 PANTHER FLIPPASE KINASE 1-RELATED 50 426 - -
Lsi03g01351 760 PANTHER FLIPPASE KINASE 1-RELATED 470 760 - -
Lsi03g01351 760 MobiDBLite consensus disorder prediction 47 114 - -
Lsi03g01351 760 MobiDBLite consensus disorder prediction 47 149 - -
Lsi03g01351 760 MobiDBLite consensus disorder prediction 263 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00506 Lsi-Chr1:4134269 Lsi03g01351 Lsi-Chr3:24384562 0 dispersed
Lsi03g01351 Lsi-Chr3:24384562 Lsi05g02229 Lsi-Chr5:28852635 0 dispersed
Lsi03g01351 Lsi-Chr3:24384562 Lsi02g01169 Lsi-Chr2:14326633 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83494 PF07714 PK_Tyr_Ser-Thr 1.90E-16 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01351 K08286 - csv:101219962 1262.67