Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01358 ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGTTAGGGTTACAAAAATGCACGTCTTGGCTCGCCGATGATTCGGGGAGTAGTGAGAGGACACATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGAGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAGATAAGGACACTATGCGAGGCACCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTAGAGTACATGGATGGAGGGTCGTTGGCAGATGTCCTGCGTCTGAAAAAATGTATACCCGAGCCTGTCCTTTCGTCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTAAAGGGTGAAGCAAAAATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCACCCGAGCGAATTCGAAACGAGACCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTTATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCACCGGAGTTTTGCTCATTTGTCGATGCCTGCTTGCAGAAAGATGCAGACGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATTAAAAGATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATGTAAGGAAGCAATTTTCTGGTCCAAATGATATCTTTGCCAAACTATCAGAAATTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTCGTCGAAAAACTCCAATGTCGTGCTCACGGTCAGGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGACGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAGAGTAAGAAAATGGGATCCTTCCGAGAGCAGTTCATCATCGAACCGAGCAACCTCATCGGTCGTTACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAG 1461 43.67 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTHRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNETYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKRYEDEQVDLAAFVQNVFDPIQRMKDLADVRKQFSGPNDIFAKLSEIRSTLAGDWPLEKLVHVVEKLQCRAHGQDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24488540 24493739 - Lsi03G013580.1 Lsi03g01358 659108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01358 486 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01358 486 CDD PKc_MAPKK_plant_like 84 343 - -
Lsi03g01358 486 PANTHER - 373 485 - -
Lsi03g01358 486 Gene3D Transferase(Phosphotransferase) domain 1 165 374 - -
Lsi03g01358 486 ProSiteProfiles Nuclear transport factor 2 domain profile. 334 484 IPR018222 -
Lsi03g01358 486 SUPERFAMILY Protein kinase-like (PK-like) 85 364 IPR011009 -
Lsi03g01358 486 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01358 486 Gene3D Phosphorylase Kinase; domain 1 58 164 - -
Lsi03g01358 486 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01358 486 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Lsi03g01358 486 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 368 - -
Lsi03g01358 486 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 373 485 - -
Lsi03g01358 486 PANTHER - 2 368 - -
Lsi03g01358 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01358 K20607 MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2] - csv:101217978 922.154
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01358 Lsi-Chr3:24488540 Lsi11g00218 Lsi-Chr11:2223292 2.94E-71 dispersed
Lsi03g01358 Lsi-Chr3:24488540 Lsi06g00302 Lsi-Chr6:3461235 2.82E-79 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00302 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 1.6e-136 482.6
Lsi11g00177 CCT 27 410 MAP Kinase Kinase Gene Family AT4G26070 56.2 1.6e-115 412.9
Lsi11g00218 . 26 332 MAP Kinase Kinase Gene Family AT4G26070 52.9 3.9e-98 355.1
Lsi06g00302 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 2.2e-133 472.2
Lsi11g00177 CCT 1 308 MAP Kinase Kinase Gene Family AT4G29810 63.3 3.4e-110 395.2
Lsi11g00218 . 10 312 MAP Kinase Kinase Gene Family AT4G29810 59.4 6.2e-104 374.4
Lsi03g01358 . 36 486 MAP Kinase Kinase Gene Family AT5G40440 73.9 5.8e-207 717.2
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT1G51660 70.8 8.7e-128 453.8
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT3G21220 69.6 4.0e-130 461.5
Lsi02g00252 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.5e-84 309.3
Lsi11g00218 . 1 335 MAP Kinase Kinase Gene Family AT5G56580 79.7 2.4e-159 558.5
Lsi08g00359 . 5 335 MAP Kinase Kinase Gene Family AT5G56580 64.6 1.9e-119 426.0
Lsi06g00302 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 2.5e-119 425.6
Lsi02g00252 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.3 9.9e-109 390.2
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G18350 52.8 2.9e-76 282.3
Lsi02g00252 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 9.8e-82 300.4
Lsi02g00252 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.2e-114 409.8
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G73500 52.5 4.5e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83495 PF00069 Pkinase 1.40E-59 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01358 Lsi_Chr03 FPKM 14.561905 16.436407 38.594193 28.321678 16.53504 14.338171 23.288074 25.083817 24.142923 25.856623