Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01358 ATGGCGGGTCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGTTAGGGTTACAAAAATGCACGTCTTGGCTCGCCGATGATTCGGGGAGTAGTGAGAGGACACATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGAGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAGATAAGGACACTATGCGAGGCACCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTAGAGTACATGGATGGAGGGTCGTTGGCAGATGTCCTGCGTCTGAAAAAATGTATACCCGAGCCTGTCCTTTCGTCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTAAAGGGTGAAGCAAAAATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCACCCGAGCGAATTCGAAACGAGACCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTTATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCACCGGAGTTTTGCTCATTTGTCGATGCCTGCTTGCAGAAAGATGCAGACGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATTAAAAGATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATGTAAGGAAGCAATTTTCTGGTCCAAATGATATCTTTGCCAAACTATCAGAAATTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTCGTCGAAAAACTCCAATGTCGTGCTCACGGTCAGGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGACGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAGAGTAAGAAAATGGGATCCTTCCGAGAGCAGTTCATCATCGAACCGAGCAACCTCATCGGTCGTTACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAG 1461 43.67 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTHRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNETYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKRYEDEQVDLAAFVQNVFDPIQRMKDLADVRKQFSGPNDIFAKLSEIRSTLAGDWPLEKLVHVVEKLQCRAHGQDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24488540 24493739 - Lsi03G013580.1 Lsi03g01358 659108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01358 486 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01358 486 CDD PKc_MAPKK_plant_like 84 343 - -
Lsi03g01358 486 PANTHER - 373 485 - -
Lsi03g01358 486 Gene3D Transferase(Phosphotransferase) domain 1 165 374 - -
Lsi03g01358 486 ProSiteProfiles Nuclear transport factor 2 domain profile. 334 484 IPR018222 -
Lsi03g01358 486 SUPERFAMILY Protein kinase-like (PK-like) 85 364 IPR011009 -
Lsi03g01358 486 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01358 486 Gene3D Phosphorylase Kinase; domain 1 58 164 - -
Lsi03g01358 486 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01358 486 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Lsi03g01358 486 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 368 - -
Lsi03g01358 486 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 373 485 - -
Lsi03g01358 486 PANTHER - 2 368 - -
Lsi03g01358 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01358 Lsi-Chr3:24488540 Lsi11g00218 Lsi-Chr11:2223292 2.94E-71 dispersed
Lsi03g01358 Lsi-Chr3:24488540 Lsi06g00302 Lsi-Chr6:3461235 2.82E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83495 PF00069 Pkinase 1.40E-59 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01358 K20607 - csv:101217978 922.154