Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01359 | ATGTCTTCTTCCACCTACTCCAATTCTCCATGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCCGATTGCGTTTTCGCCCCGTATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCGAACGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAACTACTTAACGAAGTCCAGCCGCATCAACGGGAGGACGCCGTGAACTCGCTCGCCTACGAGGCTGAGGCAAGGATGAAAGACCCTGTCTATGGCTGCGTCGGCGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTCGACGCTACCAACGCCAACCTCATTCGTTATGCCTGCAGCGAAATCCCTGCCTCATCTCCGTCCTCGTCATCGCAATACGCTCGAAGATCGTCGTCGACGAGCCACGAGGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA | 534 | 51.87 | MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPASSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGHDKGEYK | 177 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 24507575 | 24508108 | + | Lsi03G013590.1 | Lsi03g01359 | 659109 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01359 | 177 | Coils | Coil | 89 | 109 | - | - | |
Lsi03g01359 | 177 | MobiDBLite | consensus disorder prediction | 157 | 177 | - | - | |
Lsi03g01359 | 177 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 164 | - | - | |
Lsi03g01359 | 177 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Lsi03g01359 | 177 | MobiDBLite | consensus disorder prediction | 119 | 145 | - | - | |
Lsi03g01359 | 177 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 25 | 1 | 164 | - | - | |
Lsi03g01359 | 177 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 106 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00297 | Lsi-Chr3:3602061 | Lsi03g01359 | Lsi-Chr3:24507575 | 7.75E-47 | dispersed | |
Lsi03g01359 | Lsi-Chr3:24507575 | Lsi06g01582 | Lsi-Chr6:26226856 | 1.06E-75 | dispersed | |
Lsi01g00111 | Lsi-Chr1:1153248 | Lsi03g01359 | Lsi-Chr3:24507575 | 6.25E-34 | transposed | |
Lsi02g02933 | Lsi-Chr2:35515390 | Lsi03g01359 | Lsi-Chr3:24507575 | 4.96E-29 | transposed | |
Lsi02g00402 | Lsi-Chr2:3394358 | Lsi03g01359 | Lsi-Chr3:24507575 | 3.40E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25011 | PF03195 | LOB | 2.40E-42 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01359 | - | - | csv:101219482 | 326.25 |