Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01359 ATGTCTTCTTCCACCTACTCCAATTCTCCATGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCCGATTGCGTTTTCGCCCCGTATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCGAACGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAACTACTTAACGAAGTCCAGCCGCATCAACGGGAGGACGCCGTGAACTCGCTCGCCTACGAGGCTGAGGCAAGGATGAAAGACCCTGTCTATGGCTGCGTCGGCGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTCGACGCTACCAACGCCAACCTCATTCGTTATGCCTGCAGCGAAATCCCTGCCTCATCTCCGTCCTCGTCATCGCAATACGCTCGAAGATCGTCGTCGACGAGCCACGAGGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA 534 51.87 MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACSEIPASSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGHDKGEYK 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24507575 24508108 + Lsi03G013590.1 Lsi03g01359 659109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01359 177 Coils Coil 89 109 - -
Lsi03g01359 177 MobiDBLite consensus disorder prediction 157 177 - -
Lsi03g01359 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 164 - -
Lsi03g01359 177 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lsi03g01359 177 MobiDBLite consensus disorder prediction 119 145 - -
Lsi03g01359 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 164 - -
Lsi03g01359 177 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00297 Lsi-Chr3:3602061 Lsi03g01359 Lsi-Chr3:24507575 7.75E-47 dispersed
Lsi03g01359 Lsi-Chr3:24507575 Lsi06g01582 Lsi-Chr6:26226856 1.06E-75 dispersed
Lsi01g00111 Lsi-Chr1:1153248 Lsi03g01359 Lsi-Chr3:24507575 6.25E-34 transposed
Lsi02g02933 Lsi-Chr2:35515390 Lsi03g01359 Lsi-Chr3:24507575 4.96E-29 transposed
Lsi02g00402 Lsi-Chr2:3394358 Lsi03g01359 Lsi-Chr3:24507575 3.40E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25011 PF03195 LOB 2.40E-42 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01359 - - csv:101219482 326.25