Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01367 ATGGCTTCCATATTCATCCATTCCTCAAACCAATTTCCAATCCATGGAGTTCCCTTCTTCTTCTTCCTTTTTTTCTCTGTTTCTCTGTCAGATCCCCGAATCTCCGAATCCGGAAGTATCTGCGGAACCTTCAAGCCTCCACCCAAATCCAGATTCATCCCAACCTTCGTCGAAGAAATGGAAGCCATATCCGAGCTTCTCGCAACTCGCAGTTGGACCACTCACTTCGTTAATTCCACTCCCCCAATGTTCGCTCTATCCCAATGCTTCAACGATCTCTCTCACACTGATTGCCTTCTCTGCTACGCCGCCAGCCGCACCGCCCTTCCCCGCTGCCTCCCCGCCGTCTCCGCCAGGATCTTCCTCGACGGATGCTTCCTTCGGTACGACAATTACAGCTTCTACAAAGAATCCACTGATTCGCTTAGGGATTCTGTGAATTGCACCTCGGAATTAGGGGAAATCGATGAATCTGAGAGGTTAGGGTTTGGGAAGAATGTTAGGGTTGTTGTTGAGACTGTGACGAGGACGGCCATGGAGAAGGGTGGATTTGGGATTGGAGAAGTTAATGGACTGTTTGGTTTGGCACAGTGTTGGGGGAGTGTTGAGCCTAAGGGATGCAGGGCTTGCTTGGAGAAGGCGAAGAGGAGTCTTAGGAGCTGTTTGCCGAGTAGAGAAGGGAGGGCTATGAATGCTGGGTGTTATTTGAGATATTCGACTGTGAAATTCTATAACGATAAGGATGAAGAACGGGATCAAGATGGTTTTTCTGGAAGAAGAGCTGGTGTTACCATTGCCTTAGCTTCAGCTGCCTCCTTGATCATCTTCTTTTCAGCTGTGTTTGCATGCTATACAAGAATAACAAAGTTCAAGAAAGAAAAGAAAAAGCAATCCCTTATTCCAACATCCTTTAAGGATTCCAATTTGAATTTCAAGTATGAAACACTTGAAAAGGCAACTAATTACTTCAACCCATCAAGTAAGATAGGCCAAGGTGGAGCTGGCTCTGTATATAAAGGGACTCTCCCAAATGGGCAGATGGTTGCTGTGAAGAGATTGGTTTTCCATACCAGACAATGGGTGGATGAGTTCTTCAATGAGGTGAATTTGATCCGCGGAATCCAACACAAAAACCTTGTTGCTCTTTTAGGTTGCAGCATTGAAGGGCCTGAAAGTCTGCTCGTCTACGAGTATGTTCCGAACCGGAGCCTTGATCAGTTCATTTTCGATAAGAACAAGGTTCAGATTCTAACTTGGAAGCAGCGTTTCAATATTATTGTGGGAACAGCTGAGGGGCTTGCACATCTTCATGAAGGTTGTAAAATAAGAATAATCCATAGAGACATAAAGAGTAGCAATGTTCTACTGGATGAAAATTTCAATCCAAAGATTGCGGATTTTGGCCTTGCTCGGCATTTTGCAGCCGATCGGTCTCATCTTAGCACAGGAATTGCCGGGACACTGGGTTACATGGCTCCTGAATATCTCGTTCGAGGACAACTTACAGAAAAGGCAGATGTGTATAGTTTTGGAGTGTTGATACTCGAGATCGTTTGTGGTAGAAGAAACAGTTCCTTCACTGAGAACTCTACCCCACTCCTCCAAACAGTTTGGGATCTGTACAAATCAGAGAGATTAACTGAAGCCATTGACACAAGCCTGAACAAGGATTACCCTGCAAAAGAAGCCATGGATGTTCTGCAAATAGCGCTTTTATGTACACAAGCTCTAGCTTCTTTGAGACCATCAATGGCGACGATCGTGAAACTGCTCACCAGTGAAGTAGAAAGGAAGGTTGCCATCCCAGAACAACCTCCATTTTTGAATCCTTGTGGACCTTCAAGAAGGTCTTGTAGAATTAGCAGCTTGGTATCTCATGCAGTTTCCAAACTTGAAGTTTCTTCTTGCACATCAACAGATTCAAGTTCTTCTTCTAACTTGCCTTCAAGAAGTGGAGATTTTGGTGAACTGAATTCAAACTGA 1983 44.78 MASIFIHSSNQFPIHGVPFFFFLFFSVSLSDPRISESGSICGTFKPPPKSRFIPTFVEEMEAISELLATRSWTTHFVNSTPPMFALSQCFNDLSHTDCLLCYAASRTALPRCLPAVSARIFLDGCFLRYDNYSFYKESTDSLRDSVNCTSELGEIDESERLGFGKNVRVVVETVTRTAMEKGGFGIGEVNGLFGLAQCWGSVEPKGCRACLEKAKRSLRSCLPSREGRAMNAGCYLRYSTVKFYNDKDEERDQDGFSGRRAGVTIALASAASLIIFFSAVFACYTRITKFKKEKKKQSLIPTSFKDSNLNFKYETLEKATNYFNPSSKIGQGGAGSVYKGTLPNGQMVAVKRLVFHTRQWVDEFFNEVNLIRGIQHKNLVALLGCSIEGPESLLVYEYVPNRSLDQFIFDKNKVQILTWKQRFNIIVGTAEGLAHLHEGCKIRIIHRDIKSSNVLLDENFNPKIADFGLARHFAADRSHLSTGIAGTLGYMAPEYLVRGQLTEKADVYSFGVLILEIVCGRRNSSFTENSTPLLQTVWDLYKSERLTEAIDTSLNKDYPAKEAMDVLQIALLCTQALASLRPSMATIVKLLTSEVERKVAIPEQPPFLNPCGPSRRSCRISSLVSHAVSKLEVSSCTSTDSSSSSNLPSRSGDFGELNSN 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24601731 24605898 - Lsi03G013670.1 Lsi03g01367 659117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01367 660 Gene3D Phosphorylase Kinase; domain 1 283 398 - -
Lsi03g01367 660 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 21 645 - -
Lsi03g01367 660 Gene3D Transferase(Phosphotransferase) domain 1 399 603 - -
Lsi03g01367 660 Gene3D - 155 243 IPR038408 -
Lsi03g01367 660 Gene3D - 41 134 IPR038408 -
Lsi03g01367 660 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 21 645 - -
Lsi03g01367 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Lsi03g01367 660 ProSiteProfiles Gnk2-homologous domain profile. 143 243 IPR002902 -
Lsi03g01367 660 MobiDBLite consensus disorder prediction 636 660 - -
Lsi03g01367 660 Pfam Protein kinase domain 325 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01367 660 CDD STKc_IRAK 329 592 - -
Lsi03g01367 660 ProSiteProfiles Protein kinase domain profile. 323 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01367 660 Pfam Salt stress response/antifungal 160 240 IPR002902 -
Lsi03g01367 660 Pfam Salt stress response/antifungal 75 132 IPR002902 -
Lsi03g01367 660 SUPERFAMILY Protein kinase-like (PK-like) 298 591 IPR011009 -
Lsi03g01367 660 SMART serkin_6 323 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01367 660 ProSiteProfiles Gnk2-homologous domain profile. 34 134 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01367 Lsi-Chr3:24601731 Lsi08g01657 Lsi-Chr8:24371565 1.61E-149 dispersed
Lsi05g00175 Lsi-Chr5:2506651 Lsi03g01367 Lsi-Chr3:24601731 6.30E-77 transposed
Lsi03g01367 Lsi-Chr3:24601731 Lsi04g00566 Lsi-Chr4:5175720 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83496 PF00069 Pkinase 5.20E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01367 - - csv:101218775 1158.67