Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01376 ATGGCAATAACAGCCCCAGGTCAGCTCAATGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGCGTCGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACGGGTGAAATTGTTGCACTGAAGAAAATACGAATGGATAATGAAAGGGAGGGGTTCCCCATTACTGCCATACGAGAAATAAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATAAAGTTGAAAGAGATTGTGACATCTCCAGGTCCTGAGCAAGATGAACAAGGGAAGCCAGGCATGTTATCTGTCTTCATTTGCAGCATTAGCCTTCAATATGGTAACAAGTATAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGGGATATAAAAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCAGATGAAGTCAACTGGCCTGGGGTATCAAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCAATGAAGAGACGTCTTAGAGAAGTTTTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTTACTCTTGATCCTTCTCAGAGGATAGCTGCCAAGGATGCCCTAGACGCCGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAGAGTTTACCCAAGTATGAAGCATCACACGAGTTCCAGACAAAGAAGAAACGTCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACACGCACAGCATGGACGCCTTCCACCTATTCAGCAGTCGGGGCAAGCTCATGCACAGATGCGACCAGTAGCTAACCAGCCTATTCATGGGTCTCAACCACCAATTGCTGCAGGGCCTAGCCATCATTTTGGGGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAATCCTCCTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTATGGCAACACACAATATACTCAAGGACGAGGTGCACCCTATGGGTCTGGCAACATGTCTGGTGCTGGTCCAAGAGGTGGGGCTGGAGGTGGTGGTTATGGTGTGGGAGCTTCAAGTTACCCACAGAATGGTCCATATGCAGGTAGTTCTGGTACTGGCCGTGGCTCCAATGTGATGGGTGGAAACCGAAACCAACAATATGGGTGGCAACAGTGA 1392 46.84 MAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEQDEQGKPGMLSVFICSISLQYGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQAHAQMRPVANQPIHGSQPPIAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNTQYTQGRGAPYGSGNMSGAGPRGGAGGGGYGVGASSYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24706718 24713727 - Lsi03G013760.1 Lsi03g01376 659126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01376 463 Pfam Protein kinase domain 25 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01376 463 MobiDBLite consensus disorder prediction 390 406 - -
Lsi03g01376 463 MobiDBLite consensus disorder prediction 434 463 - -
Lsi03g01376 463 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 178 - -
Lsi03g01376 463 PANTHER CYCLIN-DEPENDENT KINASE C-2 178 400 - -
Lsi03g01376 463 MobiDBLite consensus disorder prediction 282 463 - -
Lsi03g01376 463 Gene3D Transferase(Phosphotransferase) domain 1 179 311 - -
Lsi03g01376 463 Gene3D Transferase(Phosphotransferase) domain 1 135 178 - -
Lsi03g01376 463 MobiDBLite consensus disorder prediction 320 334 - -
Lsi03g01376 463 PANTHER CELL DIVISION PROTEIN KINASE 5 178 - -
Lsi03g01376 463 PANTHER CELL DIVISION PROTEIN KINASE 178 400 - -
Lsi03g01376 463 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Lsi03g01376 463 Gene3D Phosphorylase Kinase; domain 1 14 134 - -
Lsi03g01376 463 ProSiteProfiles Protein kinase domain profile. 25 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01376 463 MobiDBLite consensus disorder prediction 284 313 - -
Lsi03g01376 463 SUPERFAMILY Protein kinase-like (PK-like) 19 279 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01376 Lsi-Chr3:24706718 Lsi10g00941 Lsi-Chr10:13838210 0 dispersed
Lsi03g01376 Lsi-Chr3:24706718 Lsi04g00660 Lsi-Chr4:6021885 1.22E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83498 PF00069 Pkinase 1.40E-31 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01376 K08819 K02211 cit:102621414 564.303