Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01376 | ATGGCAATAACAGCCCCAGGTCAGCTCAATGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGCGTCGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACGGGTGAAATTGTTGCACTGAAGAAAATACGAATGGATAATGAAAGGGAGGGGTTCCCCATTACTGCCATACGAGAAATAAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATAAAGTTGAAAGAGATTGTGACATCTCCAGGTCCTGAGCAAGATGAACAAGGGAAGCCAGGCATGTTATCTGTCTTCATTTGCAGCATTAGCCTTCAATATGGTAACAAGTATAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGGGATATAAAAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCAGATGAAGTCAACTGGCCTGGGGTATCAAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCAATGAAGAGACGTCTTAGAGAAGTTTTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTTACTCTTGATCCTTCTCAGAGGATAGCTGCCAAGGATGCCCTAGACGCCGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAGAGTTTACCCAAGTATGAAGCATCACACGAGTTCCAGACAAAGAAGAAACGTCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACACGCACAGCATGGACGCCTTCCACCTATTCAGCAGTCGGGGCAAGCTCATGCACAGATGCGACCAGTAGCTAACCAGCCTATTCATGGGTCTCAACCACCAATTGCTGCAGGGCCTAGCCATCATTTTGGGGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAATCCTCCTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTATGGCAACACACAATATACTCAAGGACGAGGTGCACCCTATGGGTCTGGCAACATGTCTGGTGCTGGTCCAAGAGGTGGGGCTGGAGGTGGTGGTTATGGTGTGGGAGCTTCAAGTTACCCACAGAATGGTCCATATGCAGGTAGTTCTGGTACTGGCCGTGGCTCCAATGTGATGGGTGGAAACCGAAACCAACAATATGGGTGGCAACAGTGA | 1392 | 46.84 | MAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEQDEQGKPGMLSVFICSISLQYGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQAHAQMRPVANQPIHGSQPPIAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNTQYTQGRGAPYGSGNMSGAGPRGGAGGGGYGVGASSYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ | 463 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 24706718 | 24713727 | - | Lsi03G013760.1 | Lsi03g01376 | 659126 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01376 | 463 | Pfam | Protein kinase domain | 25 | 178 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi03g01376 | 463 | MobiDBLite | consensus disorder prediction | 390 | 406 | - | - | |
Lsi03g01376 | 463 | MobiDBLite | consensus disorder prediction | 434 | 463 | - | - | |
Lsi03g01376 | 463 | PANTHER | CYCLIN-DEPENDENT KINASE C-2 | 5 | 178 | - | - | |
Lsi03g01376 | 463 | PANTHER | CYCLIN-DEPENDENT KINASE C-2 | 178 | 400 | - | - | |
Lsi03g01376 | 463 | MobiDBLite | consensus disorder prediction | 282 | 463 | - | - | |
Lsi03g01376 | 463 | Gene3D | Transferase(Phosphotransferase) domain 1 | 179 | 311 | - | - | |
Lsi03g01376 | 463 | Gene3D | Transferase(Phosphotransferase) domain 1 | 135 | 178 | - | - | |
Lsi03g01376 | 463 | MobiDBLite | consensus disorder prediction | 320 | 334 | - | - | |
Lsi03g01376 | 463 | PANTHER | CELL DIVISION PROTEIN KINASE | 5 | 178 | - | - | |
Lsi03g01376 | 463 | PANTHER | CELL DIVISION PROTEIN KINASE | 178 | 400 | - | - | |
Lsi03g01376 | 463 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 54 | IPR017441 | GO:0005524 | |
Lsi03g01376 | 463 | Gene3D | Phosphorylase Kinase; domain 1 | 14 | 134 | - | - | |
Lsi03g01376 | 463 | ProSiteProfiles | Protein kinase domain profile. | 25 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi03g01376 | 463 | MobiDBLite | consensus disorder prediction | 284 | 313 | - | - | |
Lsi03g01376 | 463 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 279 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01376 | Lsi-Chr3:24706718 | Lsi10g00941 | Lsi-Chr10:13838210 | 0 | dispersed | |
Lsi03g01376 | Lsi-Chr3:24706718 | Lsi04g00660 | Lsi-Chr4:6021885 | 1.22E-40 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83498 | PF00069 | Pkinase | 1.40E-31 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01376 | K08819 | K02211 | cit:102621414 | 564.303 |