Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01385 ATGGCGCTTCCTTGTGTGAGGATTATTGACAGTTCATCTTCGCCATTGTTGAGAGGAAGTAAATTGTCGATGTTTTGGGGAAGAGATTTGTGCTTTGGAAATGGAGGTATTAGGGATGGTCCGAGAGTGAAACCTCCATTCAATGGTCGAGCTGTTAAGGTTTTCGCCATGTCGGATAGTTCTTCTTCTTCATCGTTTAAGATGAATCTCAATGAGTACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTCGCGATTTCTGTCGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGCGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCATTGAGATTAAAGACTTTGGTGATACACAGATGATGCTGAAGGAGAAAGCAGGATCTTTTAGCCTGGTTCTTGAAAGGCCCTTTTCTCCTTTTCCTATTCAACAGCTTCTGCTTTCAAACGATTTAGATATTTTATTTAACAAAGGTCGAGTGCCTATTGCCACTTGGAAGAAAGAGGTTTTGGCATCAAATTTACAATCATCTGATGCAAGCAGTGGGAACTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTCAACATCACAAGGTTGGAAACTTCTTAACGATCAAAATGGAGATGTGAAATCACATATGCAGAAAAACATTCTCACGCCTCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTAGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGCTATATTATGATCACTCTCGTGGCATGAGCTATAGTAAGATCACGGAGCAAATCTATGTGGGGTCATGTATACAGACTGAAGCAGACGTAGAGGCTTTGTCAAATAACGTGGGAGTCACCGCTGTACTGAATTTTCAAGGTGCAACCGAGGCAGAAAACTGGGGGATTAATTCCAAGTTAATCAACGAGTCGTGCCAGAAATTTGATATTCTAATGATCAGCTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACCTCTGGTTTTGATCGATCTCCAGCAAGTGTGATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCACCCACTCATGCCGTTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCTAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTACTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGATAGGGGGAATGTCAACAATGTAATAGTCATCGGCGACACTGCCAGTTTAAAACATGCAACATTCACGCTGTAA 1641 42.84 MALPCVRIIDSSSSPLLRGSKLSMFWGRDLCFGNGGIRDGPRVKPPFNGRAVKVFAMSDSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLIEIKDFGDTQMMLKEKAGSFSLVLERPFSPFPIQQLLLSNDLDILFNKGRVPIATWKKEVLASNLQSSDASSGNSGFATFSSKFSTSQGWKLLNDQNGDVKSHMQKNILTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALSNNVGVTAVLNFQGATEAENWGINSKLINESCQKFDILMISYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTSSPAERDDRGNVNNVIVIGDTASLKHATFTL 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24823499 24828983 + Lsi03G013850.1 Lsi03g01385 659135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01385 546 ProSiteProfiles PDZ domain profile. 74 155 IPR001478 GO:0005515
Lsi03g01385 546 CDD E_set_AMPKbeta_like_N 454 533 - -
Lsi03g01385 546 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 279 425 IPR029021 -
Lsi03g01385 546 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 49 540 - -
Lsi03g01385 546 ProSiteProfiles Dual specificity protein phosphatase domain profile. 287 446 IPR020422 GO:0006470|GO:0008138
Lsi03g01385 546 SUPERFAMILY PDZ domain-like 57 121 IPR036034 GO:0005515
Lsi03g01385 546 CDD DSP_laforin-like 286 432 IPR045204 GO:0019203|GO:0046838
Lsi03g01385 546 Gene3D Immunoglobulins 441 537 IPR013783 -
Lsi03g01385 546 Pfam Glycogen recognition site of AMP-activated protein kinase 454 535 IPR032640 -
Lsi03g01385 546 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 49 540 IPR030066 GO:0005983
Lsi03g01385 546 Gene3D Protein tyrosine phosphatase superfamily 280 541 IPR029021 -
Lsi03g01385 546 Pfam Dual specificity phosphatase, catalytic domain 296 419 IPR000340 GO:0008138|GO:0016311
Lsi03g01385 546 SUPERFAMILY E set domains 451 534 IPR014756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01385 Lsi-Chr3:24823499 Lsi04g01038 Lsi-Chr4:12179322 2.99E-27 dispersed
Lsi03g01385 Lsi-Chr3:24823499 Lsi01g00499 Lsi-Chr1:4094020 7.06E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01385 - - csv:101214241 1028.85