Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01385 | ATGGCGCTTCCTTGTGTGAGGATTATTGACAGTTCATCTTCGCCATTGTTGAGAGGAAGTAAATTGTCGATGTTTTGGGGAAGAGATTTGTGCTTTGGAAATGGAGGTATTAGGGATGGTCCGAGAGTGAAACCTCCATTCAATGGTCGAGCTGTTAAGGTTTTCGCCATGTCGGATAGTTCTTCTTCTTCATCGTTTAAGATGAATCTCAATGAGTACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTCGCGATTTCTGTCGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGCGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCATTGAGATTAAAGACTTTGGTGATACACAGATGATGCTGAAGGAGAAAGCAGGATCTTTTAGCCTGGTTCTTGAAAGGCCCTTTTCTCCTTTTCCTATTCAACAGCTTCTGCTTTCAAACGATTTAGATATTTTATTTAACAAAGGTCGAGTGCCTATTGCCACTTGGAAGAAAGAGGTTTTGGCATCAAATTTACAATCATCTGATGCAAGCAGTGGGAACTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTCAACATCACAAGGTTGGAAACTTCTTAACGATCAAAATGGAGATGTGAAATCACATATGCAGAAAAACATTCTCACGCCTCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTAGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGCTATATTATGATCACTCTCGTGGCATGAGCTATAGTAAGATCACGGAGCAAATCTATGTGGGGTCATGTATACAGACTGAAGCAGACGTAGAGGCTTTGTCAAATAACGTGGGAGTCACCGCTGTACTGAATTTTCAAGGTGCAACCGAGGCAGAAAACTGGGGGATTAATTCCAAGTTAATCAACGAGTCGTGCCAGAAATTTGATATTCTAATGATCAGCTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACCTCTGGTTTTGATCGATCTCCAGCAAGTGTGATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCACCCACTCATGCCGTTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCTAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTACTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGATAGGGGGAATGTCAACAATGTAATAGTCATCGGCGACACTGCCAGTTTAAAACATGCAACATTCACGCTGTAA | 1641 | 42.84 | MALPCVRIIDSSSSPLLRGSKLSMFWGRDLCFGNGGIRDGPRVKPPFNGRAVKVFAMSDSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLIEIKDFGDTQMMLKEKAGSFSLVLERPFSPFPIQQLLLSNDLDILFNKGRVPIATWKKEVLASNLQSSDASSGNSGFATFSSKFSTSQGWKLLNDQNGDVKSHMQKNILTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALSNNVGVTAVLNFQGATEAENWGINSKLINESCQKFDILMISYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTSSPAERDDRGNVNNVIVIGDTASLKHATFTL | 546 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 24823499 | 24828983 | + | Lsi03G013850.1 | Lsi03g01385 | 659135 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01385 | 546 | ProSiteProfiles | PDZ domain profile. | 74 | 155 | IPR001478 | GO:0005515 | |
Lsi03g01385 | 546 | CDD | E_set_AMPKbeta_like_N | 454 | 533 | - | - | |
Lsi03g01385 | 546 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 279 | 425 | IPR029021 | - | |
Lsi03g01385 | 546 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC | 49 | 540 | - | - | |
Lsi03g01385 | 546 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 287 | 446 | IPR020422 | GO:0006470|GO:0008138 | |
Lsi03g01385 | 546 | SUPERFAMILY | PDZ domain-like | 57 | 121 | IPR036034 | GO:0005515 | |
Lsi03g01385 | 546 | CDD | DSP_laforin-like | 286 | 432 | IPR045204 | GO:0019203|GO:0046838 | |
Lsi03g01385 | 546 | Gene3D | Immunoglobulins | 441 | 537 | IPR013783 | - | |
Lsi03g01385 | 546 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 454 | 535 | IPR032640 | - | |
Lsi03g01385 | 546 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC | 49 | 540 | IPR030066 | GO:0005983 | |
Lsi03g01385 | 546 | Gene3D | Protein tyrosine phosphatase superfamily | 280 | 541 | IPR029021 | - | |
Lsi03g01385 | 546 | Pfam | Dual specificity phosphatase, catalytic domain | 296 | 419 | IPR000340 | GO:0008138|GO:0016311 | |
Lsi03g01385 | 546 | SUPERFAMILY | E set domains | 451 | 534 | IPR014756 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01385 | Lsi-Chr3:24823499 | Lsi04g01038 | Lsi-Chr4:12179322 | 2.99E-27 | dispersed | |
Lsi03g01385 | Lsi-Chr3:24823499 | Lsi01g00499 | Lsi-Chr1:4094020 | 7.06E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01385 | - | - | csv:101214241 | 1028.85 |