Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01392 ATGAAAGAAAAGAGTGAAAGTGGAGGTGGGTATGTGAGAGCAGATCAGATAGATCTGAAGAGCTTAGACGAGCAGTTACAGAGACATTTGAGCAAAGCATGGACCATGGAGAAGAACAAGAAGAGGGAAGATGAGGAAGGCGTCGGCGTCGGCGGTGGTGGAGGAGGAGGCGTCGGCGGAGGAAGACCGGCAATTACTAGACAGGAGTGGGAGATTGACCCTTCTAAACTCATCATCAAAACTGTCATAGCTCGTGGTACTTTTGGAACTGTTCATCGTGGAATTTATGATGGTCAAGATGTTGCTGAGAAAGAGAGAGAGTGTAGCTATGGCCTCTTTGTAGATATAATCCTCAACAAAACCGTGATTCACGAGATTGTCTTGAGCAGACAGTCAGAGGCAGAAATCGCGTCTCTTAGAGCGGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAGTTTATAGGAGCAACAATAGGCTCCTCAGATCTACAAATACAAACAGAAAATGGCCAAATTGGCATGCCCAGCAATATTTGTTGTGTTGTTGTTGAATATTGTCCTGGAGGTGCTCTGAAATCCTACCTCATAAAGAACAGGAGGAAAAAGCTGGCTTTCAAAGTAGTTGTCCAGCTAGCATTAGACCTTGCAAGAGGACTTGTGCTTTTAAACTCAAGGGGAGCTACCATTTGTAGGTTGAGCTATCTTCATTCACAGAAGATTGTTCATAGAGATGTCAAAACAGAAAATATGCTTCTGGACAAAACGAGAACAGTAAAAATTGCAGACTTTGGCGTTGCTCGTGTTGAGGCCTCAAATCCCAATGATATGACTGGCGAGACTGGAACCCTTGGGTATATGGCTCCAGAGGTTCTCAATGGCAATCCATATAACAGGAAGTGTGATGTCTACAGCTTTGGCATCTGTTTATGGGAAATATACTGCTGCGATATGCCGTATCCCGACCTTAGCTTCTCAGAAGTGACATCAGCTGTTGTCCGACAGAATCTGAGGCCAGAGATTCCTCGGTGTTGCCCGAGCTCGCTTGCAAATGTAATGAAGCGATGCTGGGATGCTAACCCCGACAAGCGTCCAGAGATGGATGAGGTTGTAACCATGTTGGAAGCAATCGACACATCGAAGGGTGGAGGTATGATCCCCCTCGATCAGTCGCAAGGCTGTTTTTGCTTCCGCAGGTACCGAGGGCCTTAA 1233 45.9 MKEKSESGGGYVRADQIDLKSLDEQLQRHLSKAWTMEKNKKREDEEGVGVGGGGGGGVGGGRPAITRQEWEIDPSKLIIKTVIARGTFGTVHRGIYDGQDVAEKERECSYGLFVDIILNKTVIHEIVLSRQSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATIGSSDLQIQTENGQIGMPSNICCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLVLLNSRGATICRLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPLDQSQGCFCFRRYRGP 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24889505 24893686 + Lsi03G013920.1 Lsi03g01392 659142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01392 410 PRINTS Tyrosine kinase catalytic domain signature 352 374 IPR001245 GO:0004672|GO:0006468
Lsi03g01392 410 PRINTS Tyrosine kinase catalytic domain signature 242 260 IPR001245 GO:0004672|GO:0006468
Lsi03g01392 410 PRINTS Tyrosine kinase catalytic domain signature 308 330 IPR001245 GO:0004672|GO:0006468
Lsi03g01392 410 PRINTS Tyrosine kinase catalytic domain signature 191 204 IPR001245 GO:0004672|GO:0006468
Lsi03g01392 410 Gene3D Transferase(Phosphotransferase) domain 1 194 397 - -
Lsi03g01392 410 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 404 - -
Lsi03g01392 410 MobiDBLite consensus disorder prediction 33 64 - -
Lsi03g01392 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Lsi03g01392 410 SMART serkin_6 77 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01392 410 SUPERFAMILY Protein kinase-like (PK-like) 63 381 IPR011009 -
Lsi03g01392 410 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 404 - -
Lsi03g01392 410 Pfam Protein tyrosine and serine/threonine kinase 79 381 IPR001245 GO:0004672|GO:0006468
Lsi03g01392 410 CDD STKc_MAP3K-like 83 381 - -
Lsi03g01392 410 MobiDBLite consensus disorder prediction 33 48 - -
Lsi03g01392 410 ProSiteProfiles Protein kinase domain profile. 77 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01392 410 Gene3D Phosphorylase Kinase; domain 1 64 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02266 Lsi-Chr2:29246055 Lsi03g01392 Lsi-Chr3:24889505 1.16E-28 dispersed
Lsi03g01392 Lsi-Chr3:24889505 Lsi05g01626 Lsi-Chr5:23901512 2.78E-145 dispersed
Lsi02g00366 Lsi-Chr2:3140797 Lsi03g01392 Lsi-Chr3:24889505 3.07E-56 wgd
Lsi03g01392 Lsi-Chr3:24889505 Lsi06g01545 Lsi-Chr6:25801745 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83499 PF07714 PK_Tyr_Ser-Thr 2.10E-55 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01392 - - csv:101212631 691.034