Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01401 ATGGAATCTGGTCGGTTCTTGTTTAATCCGCCGCCTTGCGGTGGCAACATGCTTTACCTTGGCGGAGCCGGTGGCGATCCTTGTCTGCGAGGAGGAAAAACAATGATGAGCATGACCACGAATGAGAGTCCCAAGGGAAGGCCATTTTTCAGATCACTTGACGATCTTTACGATGATGAATATTATGACGAGTTCTACCCCGAGAAGAAGCGTCGTCTCACCCACGACCAGGTTCAAATGCTGGAGAAGAACTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGCTGGGGCTGCAACCGAGGCAGGTTGCTGTGTGGTTCCAAAATCGTCGTGCTCGATGGAAGACAAAGCAACTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATATGCTTCGGTCTAACTATGACTCAATAGTCAAGGAGAATGCAGTTCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCAAGGTAAAGGGCTGGATGGAGGAGATGCACCAATTCCATGTGTAACATCAGAGCTTCTTCTAGCAGAAATCGCCCATATCTCTGCCCCACACTCCGGCAGAAAGGCCGAAGATCGTCTCAGTTCAGGGAGTGATAGCAGTGCAGTGATCGATGATAATTATCTACAACTCATCGACAGTGGTGATTCTTACTTCCCTAGCAACGAGTATCCGCAATTGCCTAACGGGTTGCAAATGGAACACGATGATACGAACGATAATAGCAACTACTTGTTCTCGGATATGTTTGCAGCAACAAACCAACAGAATCAGGAGGGAGGGGCTCCAGCTTGGTGGGCATGGCCGTAG 843 48.16 MESGRFLFNPPPCGGNMLYLGGAGGDPCLRGGKTMMSMTTNESPKGRPFFRSLDDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDMLRSNYDSIVKENAVLKSEVASLTEKCQGKGLDGGDAPIPCVTSELLLAEIAHISAPHSGRKAEDRLSSGSDSSAVIDDNYLQLIDSGDSYFPSNEYPQLPNGLQMEHDDTNDNSNYLFSDMFAATNQQNQEGGAPAWWAWP 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24962142 24966946 + Lsi03G014010.1 Lsi03g01401 659151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01401 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 248 - -
Lsi03g01401 280 Gene3D - 67 130 - -
Lsi03g01401 280 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Lsi03g01401 280 SUPERFAMILY Homeodomain-like 66 126 IPR009057 -
Lsi03g01401 280 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Lsi03g01401 280 Pfam Homeobox associated leucine zipper 124 165 IPR003106 GO:0006355|GO:0043565
Lsi03g01401 280 SMART HOX_1 67 128 IPR001356 GO:0003677
Lsi03g01401 280 CDD homeodomain 69 125 IPR001356 GO:0003677
Lsi03g01401 280 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Lsi03g01401 280 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Lsi03g01401 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 248 IPR045224 GO:0003700
Lsi03g01401 280 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Lsi03g01401 280 Coils Coil 123 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00316 Lsi-Chr2:2714297 Lsi03g01401 Lsi-Chr3:24962142 8.89E-46 dispersed
Lsi02g01495 Lsi-Chr2:20804999 Lsi03g01401 Lsi-Chr3:24962142 1.13E-39 dispersed
Lsi03g01401 Lsi-Chr3:24962142 Lsi04g02252 Lsi-Chr4:29557379 1.40E-39 dispersed
Lsi02g01555 Lsi-Chr2:21409572 Lsi03g01401 Lsi-Chr3:24962142 2.19E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25013 PF00046 Homeodomain 4.40E-18 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01401 K09338 - csv:101212142 470.7