Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01408 ATGGATAGATTCATCCAGTCGCCGGCGTCCAAGTTCCGTCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCGGCGCGGCAGCCGCCACGGACGAACACCCAAATTACATCCTCCTACGCTACCAAATCTTAGACCCTGATAGCGACATTGTAGCACAATGGAACCGCGTGTTTCTAGTTACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGGCCGGCGTGCCTGACCTCAGAGGTGCATCTGGGAGTGGCGATCACATTCTTCAGAACGGTGACGGATCTGTTCTTCTTGCTGCACATGGTGCTGAAGTTTCGAACCGCGTATGTGGCTCCAAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAATCTGATTTTATAGTGATGTGGTTGGTGATTCCAGCAACAAGAAACTCAAGGGTGGATCATGCCAACAACACAATTGCTCTCCTTGTTCTGCTCCAATACGTTCCAAGGCTGTTCCTCATCTTTCCTCTCAACCAACGTATCATCAAAACCACTGGTGTTGTTGCCAAAACTGCTTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCTAGTCATGTTTTGGGATCTACATGGTATTTGTTGTCCATAGGGAGGCAGTTCTCATGTTGGAAATCAGAGTGTGCAAAGGAAAATGCCTCCAAAATTCTAACATGCCTTCCCATCTTCTTGGATTGTAACAGTTTGAATGACAATGAAAGACAATACTGGCTTAATGTCACTCAGGTTACTTCCAAATGTGATCCAAGGAATGAAAACATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATACGGTCAAACTTTGGATACAACAACTTACATTGGCGAGACATTATTTTGCATATCAACTTGCATATTTGGGTTGATACTATTTTCACAACTCATTGGCAACATGCAGACATACTTGCAATCAATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGGGATACTGAAGAATGGATGAGACGTCGTCAATTACCACCAGATTTGCAAGAACGAGTTCGCCGATTCGTTCAATATAAATGGCTGGCCACAAGAGGAGTTAATGAAGAATCCATATTGCGTTCGTTGCCTATAGACCTTCGCCGTGAGATTCAACAACATTTGTGTTTGTCGCTCGTTCGTCGTGTGCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTTTAGTCTCATCCTTGTGTACTCAAGGAACGTACATTGTGCGAGAGGATGAGCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCGACGACGAATGGCGGTCGATCTGGCTTTTTCAACTCCATTACACTAAAACCAGGTGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGTTCTAGTTTGAATATGCCTTCTTCTACTCGAACCGTCCGAGCGCTTACCGAAGTTGAAGCTTTCGCTCTCCGAGCTGAGGATCTCAAGTTCGTTGCCGGACAATTCAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTACTATTCCCATCAATGGAGGACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGCTCAGCAGCATTCAGAGACAGTTTAAGTTACTATGCAGATTCAATGCACCAAGATATCGAATACGATATAGAGCTAGCAGATGATAATTATGACGACAACAGCAGTGACGACGACGATGACATGTCTTCTGCAGACTACATGAACAAATCTCAACATCTAGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAAAGGCTCAAACATCTAAACCTTCCAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2106 44.3 MDRFIQSPASKFRPFRRQLIGSSSDSATGAAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVHLGVAITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFIVMWLVIPATRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASKILTCLPIFLDCNSLNDNERQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDEPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRTVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKSSAAFRDSLSYYADSMHQDIEYDIELADDNYDDNSSDDDDDMSSADYMNKSQHLGATILASKFAANTRRGVNQKAQTSKPSSLKMPKLFKPDEPDFSMDG 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25030619 25035503 - Lsi03G014080.1 Lsi03g01408 659158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01408 701 Gene3D Helix hairpin bin 371 435 - -
Lsi03g01408 701 ProSiteProfiles Adenosine to inosine editase domain profile. 52 98 IPR002466 GO:0003723|GO:0004000|GO:0006396
Lsi03g01408 701 SUPERFAMILY cAMP-binding domain-like 374 569 IPR018490 -
Lsi03g01408 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 699 - -
Lsi03g01408 701 SMART cnmp_10 444 575 IPR000595 -
Lsi03g01408 701 MobiDBLite consensus disorder prediction 669 684 - -
Lsi03g01408 701 Pfam Ion transport protein 58 371 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi03g01408 701 MobiDBLite consensus disorder prediction 669 701 - -
Lsi03g01408 701 CDD CAP_ED 444 575 IPR000595 -
Lsi03g01408 701 Pfam Cyclic nucleotide-binding domain 467 554 IPR000595 -
Lsi03g01408 701 Gene3D - 61 369 - -
Lsi03g01408 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 37 699 - -
Lsi03g01408 701 Gene3D Jelly Rolls 442 562 IPR014710 -
Lsi03g01408 701 SUPERFAMILY Voltage-gated potassium channels 49 366 - -
Lsi03g01408 701 MobiDBLite consensus disorder prediction 687 701 - -
Lsi03g01408 701 ProSiteProfiles cAMP/cGMP binding motif profile. 444 574 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01408 Lsi-Chr3:25030619 Lsi05g02118 Lsi-Chr5:28052480 3.76E-140 dispersed
Lsi02g00025 Lsi-Chr2:304537 Lsi03g01408 Lsi-Chr3:25030619 5.85E-106 transposed
Lsi03g00156 Lsi-Chr3:2155704 Lsi03g01408 Lsi-Chr3:25030619 1.66E-50 transposed
Lsi03g01439 Lsi-Chr3:25336909 Lsi03g01408 Lsi-Chr3:25030619 0 transposed
Lsi04g02170 Lsi-Chr4:28747420 Lsi03g01408 Lsi-Chr3:25030619 9.08E-10 transposed
Lsi04g02203 Lsi-Chr4:29068095 Lsi03g01408 Lsi-Chr3:25030619 0 transposed
Lsi05g00173 Lsi-Chr5:2444454 Lsi03g01408 Lsi-Chr3:25030619 2.92E-10 transposed
Lsi07g00120 Lsi-Chr7:1352537 Lsi03g01408 Lsi-Chr3:25030619 9.04E-115 transposed
Lsi10g01258 Lsi-Chr10:16827240 Lsi03g01408 Lsi-Chr3:25030619 0 transposed
Lsi11g00684 Lsi-Chr11:7207436 Lsi03g01408 Lsi-Chr3:25030619 0 transposed
Lsi03g01408 Lsi-Chr3:25030619 Lsi06g01543 Lsi-Chr6:25786415 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01408 K05391 - csv:101216651 1304.66