Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01412 ATGGATCTGGAGAGTGCTATTGGGGGCCACCCAATCAAGAAAGATTCATGGAGAGCTGTTTTAACTTTGGCTTATCAGAGCTTGGGGGTTGTTTATGGCGATTTGAGCACTTCTCCTTTGTATGTTTACAAAAGCACTTTTGCTGAGGATATTCAGCACTCTGAATCCAACGAAGAGATTTATGGAGTTCTTTCTTTTGTCTTCTGGACTCTCACGCTCATTCCTTTGATTAAGTACGTTTTTATTGTGCTTCGAGCTGATGATAATGGCGAAGGGGGAACTTTCGCTTTGTACTCATTGCTCTGCCGCCATGCCCGAGTTAGCTCCTTGCCCAATTGCCAACTTGCAGATGAGGACCTTTCGGAATATACGAAAGATGGGATGGATTTAACCAACAAGAACACTTGTGGGTCGAGACTGAAATCGACATTAGAGAAGCACAGAGTACTGCAGAGGGTTTTGCTTGTTCTAGCTTTGATTGGGGCTTGCATGGTGATTGGAGATGGAGTTCTTACACCTGCAATTTCTGTTTTCTCTGCGGTTTCTGGGCTGGAACTTTCCATGGCTAAAGAACACCATCGCTATGTTGAAGTCCCGGTTGCTTGTGCCATATTGGTATTCCTGTTTGCAATTCAACATTATGGAACCCATCGAGTCGGGTTTCTGTTTGCACCAGTTGTAATTACCTGGCTCCTGTGTATCAGTGCCATAGGGCTGTACAATATCTTCTACTGGAATCCGCATGTTTACCGAGCGCTCTCCCCATATTATATGTACAAATTTCTGAAGAAGACCCAAAGGGGAGGTTGGATGTCCCTCGGCGGAATCCTGTTATGTATTACAGGTTCAGAAGCAATGTTTGCTGATCTCGGGCACTTCTCGCAGTTATCTATCAAGATTGCTTTCTCTTTTGTTGTTTATCCATCTTTGGTCCTGGCATACATGGGACAAGCTGCTTATCTTTCTCAACATCACGGCGCAGAAAGTAACTACCGAATCGGATTTTATGTGTCTGTTCCTGAGAAAATAAGAGTGCCCGTTCTTGTGATCGCCATTTTAGCCGCAGTGGTTGGAAGTCAAGCTGTCATTACTGGAACTTTTTCGATAATAAAACAGTGCTCCTCATTGGGTTGCTTCCCGAGGGTCAAAATTGTTCATACCTCCTCGAAAATCCATGGTCAGATTTATATACCGGAGATCAACTGGACGTTGATGCTCTTATGCTTGGCTATTACAGTTGGCTTTCGAGACACAAAACGCATGGGCAATGCATCAGGCTTAGCAGTGATAACTGTTATGCTGGTGACAACCTGCCTAATGTCTGTAGTCATCATCTTGTGCTGGCATAAAAGCTTTCTCTATGCCATTGCCTTCATACTCATTTTCGGGTCCATCGAATCGCTATACTTTTCAGCATCTCTCATCAAGTTTCGAGAAGGGGCCTGGGTTCCCATCGCCCTCTCATTCATCTTCCTAATAGTCATGTATGTATGGCATTATGGAACGCGTAAAAAATACGAGTTTGATGTTCAAAACAAAGTCTCAATCAACTGGCTCCTAGGCCTAGGTCCCAGTTTAGGCATTGTGAGAGTACGCGGGATTGGCCTCATATACACCGAACTCGTCTCAGGAATCCCCGCTATCTTCTCCCACTTCGTAACAAACCTCCCCGCCTTCCACCAAGTCCTAGTCTTCCTCTGCATCAAATCCGTCCCTGTCCCACACGTGAGACCAGGGGAAAGGTTCCTAGTAGGACGAGTTGGGCCAAAAGAATACCGTCTCTACCGATGCATAGCACGATACGGCTATCGTGACATCCACAAAGACGACATGGAGTTCGAAAAGGACTTGGTATGCAGCATTGCAGAGTTCATCCGATCCGAGAAGGCAGAGACAAGCGTAAAGCTAGAAGATGTAGAAGAAAGTGAGAGAATGACAGTAGTTGGGACATCTTCAACACAGGTAGATGGAGTGAGAATGTGTGAAGATGAAGGAGAAACAGCAGAAACATCAGAGGTAAGAGAGATAAAATCACCAAAAAAACTGAGGAAAAGAGTGAGGTTTGTTGTACCAGAGAGCCCCCAAATGGAAATGGAAGCAAGGAGGGAGCTACAAGAGCTAATGGAAGCTAGAGAAGCAGGAATGGCTTTCATAATGGGACATTCATATGTGAAGGCAAAGAGAGGATCAGGTTTAGTGAAGAAAGTGGTGATAAATTATGGGTATGATTTTTTGAGAAGAAACTCAAGAGGGCCAAGTTATGCTTGGAGTGTGCCTCATGCATCTACTTTAGAAGTGGGAATGGTCTACCAAGTTTGA 2319 44.76 MDLESAIGGHPIKKDSWRAVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIQHSESNEEIYGVLSFVFWTLTLIPLIKYVFIVLRADDNGEGGTFALYSLLCRHARVSSLPNCQLADEDLSEYTKDGMDLTNKNTCGSRLKSTLEKHRVLQRVLLVLALIGACMVIGDGVLTPAISVFSAVSGLELSMAKEHHRYVEVPVACAILVFLFAIQHYGTHRVGFLFAPVVITWLLCISAIGLYNIFYWNPHVYRALSPYYMYKFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFSFVVYPSLVLAYMGQAAYLSQHHGAESNYRIGFYVSVPEKIRVPVLVIAILAAVVGSQAVITGTFSIIKQCSSLGCFPRVKIVHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKRMGNASGLAVITVMLVTTCLMSVVIILCWHKSFLYAIAFILIFGSIESLYFSASLIKFREGAWVPIALSFIFLIVMYVWHYGTRKKYEFDVQNKVSINWLLGLGPSLGIVRVRGIGLIYTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPGERFLVGRVGPKEYRLYRCIARYGYRDIHKDDMEFEKDLVCSIAEFIRSEKAETSVKLEDVEESERMTVVGTSSTQVDGVRMCEDEGETAETSEVREIKSPKKLRKRVRFVVPESPQMEMEARRELQELMEAREAGMAFIMGHSYVKAKRGSGLVKKVVINYGYDFLRRNSRGPSYAWSVPHASTLEVGMVYQV 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25070978 25076920 + Lsi03G014120.1 Lsi03g01412 659162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01412 772 TIGRFAM kup: potassium uptake protein 23 772 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi03g01412 772 PANTHER POTASSIUM TRANSPORTER 6 1 772 - -
Lsi03g01412 772 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 772 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi03g01412 772 Pfam K+ potassium transporter 25 605 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00548 Lsi-Chr2:4800274 Lsi03g01412 Lsi-Chr3:25070978 0 dispersed
Lsi02g00549 Lsi-Chr2:4809632 Lsi03g01412 Lsi-Chr3:25070978 0 dispersed
Lsi03g01412 Lsi-Chr3:25070978 Lsi11g00079 Lsi-Chr11:846089 0 dispersed
Lsi02g01264 Lsi-Chr2:16775702 Lsi03g01412 Lsi-Chr3:25070978 0 transposed
Lsi03g00945 Lsi-Chr3:18039437 Lsi03g01412 Lsi-Chr3:25070978 0 transposed
Lsi04g01031 Lsi-Chr4:11824195 Lsi03g01412 Lsi-Chr3:25070978 0 transposed
Lsi05g00431 Lsi-Chr5:5469034 Lsi03g01412 Lsi-Chr3:25070978 3.92E-109 transposed
Lsi02g01554 Lsi-Chr2:21392597 Lsi03g01412 Lsi-Chr3:25070978 0 wgd
Lsi03g01412 Lsi-Chr3:25070978 Lsi04g00532 Lsi-Chr4:4919570 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01412 K03549 - csv:101211664 1481.08