Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g01416 | ATGGAGAGAAGCTTGTTTTACAAAGATGTTGTGCCATTCGCCGCCATGGTTGCGGCGGAGTGCGCCACCGTTGGCTCCAACACCGGCTTCAAAGCCGCCACAGCTAGAGGTATCAGCTACTATGTCTTCACCCTCTATGTTTGTATCGTCGCCGCCGTCGTCCTCGTCCCGTTCGCCGTCATCTTTCATAAGTCGCCGGAGCTTCCTCCCAACAAAATTTCCTTTTTCTTCAAAATCGTTGGCCTCTCGGCGCTCGGTCTTTCGTGTCAATTGCTTGGAAACAAAGGACTTGAATACAGCTCACCAACTCTTTCATCGGCCATTAGCAACCTAATTCCAGCTTTCACTTTCATTATGGCTGTCTTTTTCAGGATGGAAAAGATAGATTTGAAAAGAAGCAGCAGCATAGTCAAAATAGTGGGGTCAACAGTGTCCATATCAGGTGCTTTGGTAGTGGTTTTGTACAAAGGCCCAATTGTGATATCAAACCCATATTCTCATGGCCCAAAAGAGTTGGGCCTTCTTTATCAAAATCCCCCTTTGCGCTCTTCACATCCTCAGCCCAATTGGATAATGGGTGGCCTTTGCTTTGTTTTTCAATACCTTTCCAACTCCTTTTGGTACATTCTTCAGACCCAAATCATAAAAATTTACCCAGATGAGGTAAGTGTGGTGGCAGCTTACTACGTTATCCAGGCAATTTTAACTGCCCCAATTTGTTTGATAGCAGAAAGAGATATGAGTGCTTGGAAGCTAACAAATCCACTCAGTTTTCTTTTGATTTTAAACTCGGGTTTGATGGGGCAATCTTTTGTGGCTGCCATCCACACTTGGGGACTGAACTTGAAGGGGCCTGTTTATGTGTCTAGTTTTAGGCCATTGTCCATTGCCATTGCAGCTGCCATGGGTGCCATTCTCCTTGGTGATGATCTTCATCTTGGAAGTATAATTGGAGCAATCATAATATCAATTGGATTCTATGGCATATTGTGGGGAAAAGCAAAAGAAGAAGAATTGAAGGAATTAGAAGGTGTTTGTGGGTTGGAATCTTCATCCAAAGCTCCATTGTTGCAATCTTATAGAGTTCAAGAAGCATAA | 1098 | 43.99 | MERSLFYKDVVPFAAMVAAECATVGSNTGFKAATARGISYYVFTLYVCIVAAVVLVPFAVIFHKSPELPPNKISFFFKIVGLSALGLSCQLLGNKGLEYSSPTLSSAISNLIPAFTFIMAVFFRMEKIDLKRSSSIVKIVGSTVSISGALVVVLYKGPIVISNPYSHGPKELGLLYQNPPLRSSHPQPNWIMGGLCFVFQYLSNSFWYILQTQIIKIYPDEVSVVAAYYVIQAILTAPICLIAERDMSAWKLTNPLSFLLILNSGLMGQSFVAAIHTWGLNLKGPVYVSSFRPLSIAIAAAMGAILLGDDLHLGSIIGAIIISIGFYGILWGKAKEEELKELEGVCGLESSSKAPLLQSYRVQEA | 365 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 25111457 | 25117014 | + | Lsi03G014160.1 | Lsi03g01416 | 659166 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g01416 | 365 | PANTHER | WAT1-RELATED PROTEIN | 10 | 339 | - | - | |
| Lsi03g01416 | 365 | PANTHER | WAT1-RELATED PROTEIN | 10 | 339 | IPR030184 | GO:0016021|GO:0022857 | |
| Lsi03g01416 | 365 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 249 | 335 | - | - | |
| Lsi03g01416 | 365 | Pfam | EamA-like transporter family | 203 | 330 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi03g01416 | 365 | Pfam | EamA-like transporter family | 23 | 146 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi03g01416 | 365 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 46 | 153 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g01544 | Lsi-Chr2:21295930 | Lsi03g01416 | Lsi-Chr3:25111457 | 8.27E-86 | dispersed | |
| Lsi02g01546 | Lsi-Chr2:21316877 | Lsi03g01416 | Lsi-Chr3:25111457 | 1.17E-29 | dispersed | |
| Lsi03g01416 | Lsi-Chr3:25111457 | Lsi08g01356 | Lsi-Chr8:21887221 | 7.54E-47 | dispersed | |
| Lsi03g01415 | Lsi-Chr3:25098181 | Lsi03g01416 | Lsi-Chr3:25111457 | 1.05E-120 | tandem | |
| Lsi02g01545 | Lsi-Chr2:21306261 | Lsi03g01416 | Lsi-Chr3:25111457 | 1.08E-31 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g01416 | - | - | cmax:111486393 | 604.749 |