Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01427 ATGGAGATTCTGAAGTTTCTCTTCATTCTTCTCTCTACGGCGTCGTTTTTCTCTCTATCGGAATCCGTTCCTCTCACGGCGAATTACTACCAGAAATCCTGCCCGAGATTCAGCCAGATTATCCAAGATACAGTCACCAACAAGCAGATCACTAGCCCTTCCACCGCCGCCGGAACTCTTCGCCTCTTCCTCCACGATTGTCTTCCCAACGGCTGCGACGGCTCCGCCCTCATCTCCTCCACTCCCTTCAACAAAGCCGAGCGCGACGCCGACATCAACCTCTCTCTCCCAGGCGACGCCTTCGATGTTATTGTTCGGGCCAAGACCGCTCTCGAGCTCGCATGTCCCAATACCGTCTCCTGTGCTGACATTCTCGCCGTTGCCACTCGCGACCTCGTCACCATGGTTGGCGGACCTTACTACAACGTTCTCCTTGGTCGCAGAGATGGCCGAGTGTCCAAAGCTTCGACGATTCCTGGTGCTCTACCGAAAGCTACCTCGCCGATTCCTCAGATTATTGATATGTTTAAAGCTCGGGGGTTTACTATCCAGGAAATGGTAGCGTTAAGTGGTGCTCATACGATTGGATTCTCGCATTGTAAGGAATTCAGCTCTCAGATCTATAATTATAGCAAGTCGTCTTCGTATGATACGCAGTATAACCCTAGATTCGCGCAAGGGTTGCAGAAAGCTTGTTCTGGTTTTCAAAAGAATCCTACATTATCGGTTTTCAATGACATTATGACTCCCAATAAATTTGATAACTCTTACTTCCAGAATCTGCCGAAGGGATTGGGGATCTTGCAGTCTGATCATGGGTTGTATAATGATTGGAGGACGAGGCCATTCGTAGAGGCGTATGCGGCGGATGAGAAACAGTTCTTCAATGATTTTGCTCGGGCGATGGAGAAGTTGAGTAATTATAAAGTTGTGACAGGGAATCAAGGGGAGATTCGGCATAAATGTGATGCAATTAATTGA 981 48.52 MEILKFLFILLSTASFFSLSESVPLTANYYQKSCPRFSQIIQDTVTNKQITSPSTAAGTLRLFLHDCLPNGCDGSALISSTPFNKAERDADINLSLPGDAFDVIVRAKTALELACPNTVSCADILAVATRDLVTMVGGPYYNVLLGRRDGRVSKASTIPGALPKATSPIPQIIDMFKARGFTIQEMVALSGAHTIGFSHCKEFSSQIYNYSKSSSYDTQYNPRFAQGLQKACSGFQKNPTLSVFNDIMTPNKFDNSYFQNLPKGLGILQSDHGLYNDWRTRPFVEAYAADEKQFFNDFARAMEKLSNYKVVTGNQGEIRHKCDAIN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25241352 25242332 + Lsi03G014270.1 Lsi03g01427 659177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01427 326 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 Gene3D - 28 326 - -
Lsi03g01427 326 Gene3D Peroxidase, domain 2 163 305 - -
Lsi03g01427 326 CDD secretory_peroxidase 25 325 IPR033905 GO:0004601|GO:0042744
Lsi03g01427 326 PANTHER - 5 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Lsi03g01427 326 Pfam Peroxidase 46 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 ProSiteProfiles Plant heme peroxidase family profile. 24 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g01427 326 PANTHER PEROXIDASE 31 5 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00351 Lsi-Chr2:3006170 Lsi03g01427 Lsi-Chr3:25241352 2.10E-141 dispersed
Lsi03g01427 Lsi-Chr3:25241352 Lsi05g01275 Lsi-Chr5:20482664 1.52E-82 dispersed
Lsi02g01539 Lsi-Chr2:21230961 Lsi03g01427 Lsi-Chr3:25241352 9.10E-167 wgd
Lsi03g01427 Lsi-Chr3:25241352 Lsi06g01521 Lsi-Chr6:25632662 3.48E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01427 K00430 - csv:101219829 630.557