Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01428 ATGGCCGCCGGCGGAGGAACAGAGGCTTTCCCCGATCTCGGCCGCCACTGCCAGCACTCCGATTGCCACCAACTCGATTTCCTCCCCTTCACCTGCGACGGTTGCCAAAAGGTGTTCTGTTTGGAGCATCGCGGTTTCAAATCCCACGACTGCCCTAAATCCGATCGGAACAGCAGAAAAGTGGTGGTTTGCGAAATCTGCTCGACGTCGATCGAGACCACCGGGAAGGACGGCGGCGACGAGACCAGGATTTTGGAAAGGCATCACGAATCGGGAGATTGCGATCCGAGCAAGAAGAAGAAACCCACATGTGCTGTGAGGCGGTGCCGGGAAATTCTTACGTTTTCCAATACTTGTGTGTGTAAAACCTGCCGGATGAAGGTGTGTTTGAAGCACCGGTTTCCGGCGGAGCATGGTTGTGGACGGCCGTCGTCGACGGCAACGGCAGTGGTGGATAAAGGTCGGTGGAATGAGAAGTTTATGGCGGCTTTGGGGTTGAGGAGCGGCGGCGATTGTGGGAAGAGGGAACGTCCGACGGCGGCGAAGGGATCTTCTCCGACTGCCCCATCTGTTAAAGCTTGTTGA 585 56.58 MAAGGGTEAFPDLGRHCQHSDCHQLDFLPFTCDGCQKVFCLEHRGFKSHDCPKSDRNSRKVVVCEICSTSIETTGKDGGDETRILERHHESGDCDPSKKKKPTCAVRRCREILTFSNTCVCKTCRMKVCLKHRFPAEHGCGRPSSTATAVVDKGRWNEKFMAALGLRSGGDCGKRERPTAAKGSSPTAPSVKAC 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25247337 25248392 + Lsi03G014280.1 Lsi03g01428 659178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01428 194 ProSiteProfiles Zinc finger AN1-type profile. 98 148 IPR000058 GO:0008270
Lsi03g01428 194 Gene3D - 2 70 IPR035896 -
Lsi03g01428 194 SUPERFAMILY AN1-like Zinc finger 64 145 IPR035896 -
Lsi03g01428 194 ProSiteProfiles Zinc finger AN1-type profile. 11 59 IPR000058 GO:0008270
Lsi03g01428 194 Pfam AN1-like Zinc finger 104 142 IPR000058 GO:0008270
Lsi03g01428 194 Pfam AN1-like Zinc finger 17 54 IPR000058 GO:0008270
Lsi03g01428 194 SUPERFAMILY AN1-like Zinc finger 10 57 IPR035896 -
Lsi03g01428 194 SMART AN1_Zf_4 17 56 IPR000058 GO:0008270
Lsi03g01428 194 SMART AN1_Zf_4 104 145 IPR000058 GO:0008270
Lsi03g01428 194 MobiDBLite consensus disorder prediction 170 194 - -
Lsi03g01428 194 Gene3D - 81 157 IPR035896 -
Lsi03g01428 194 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 7 178 - -
Lsi03g01428 194 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 7 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01854 Lsi-Chr1:19993776 Lsi03g01428 Lsi-Chr3:25247337 6.15E-39 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01428 - - csv:101220304 390.578