Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01439 ATGTTCGATTGTGGTGGATACAAGTCGCAGTACATCGCCGGTCACAAGGAGAAATTCGTGAGGTATGTTCTCCAATTCCTGAACAGAACTAATCGATTTACACTCAGTTTCTTCGTCCATTCGAGAGATTTTACTTTCCATGGACCTCGTAGGTTAGATGATTTGGATTCAAATTTGTCAATGTCCTCTGGAACAAGCAAGATGAAGAAATGCCGATTCAACCTAGAAGGCCTCCCACTGCCATTCATCAGCCGATCGAAGCCACAAAACGCGTCGAAATCGTTCCGAAGAGGAGTCCAAAGGAGCTCCGACGGAATCAAAACCTTAGGTCGATCGCTCCGCTCCGGCGTGTCCAAAGTCATCTTTCCGGAGGATCTGAAAGTATCAGAACAGAAAATCTTCGATCCGCAAGACAAATCGCTCCTCTTCTGGAACAAGCTATTCGTGTTGTGCTGTATCCTCGCCGTCTCTGTCGATCCGCTGTTCTTCTACCTCCCTGTGTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTAAGCTCGCCGTCACGACCACCACCGTGCGTACGGCCATCGATGTTTTCTACTTGATTCGTATGGCATTTCAGTTCCGGACGGCTTACATTGCGCCGTCGTCGAGGGTATTTGGTCGCGGCGAGCTTGTGATCGATCCGACGGAGATCGCCCAACGGTATCTTCAGCGCTACTTTATCGCTGATTTTCTCTCTGTTCTTCCTCTTCCTCAGGTGGTGGTGTGGAGGTTTCTTCACAGATCAAAAGGCTCAGAAGTTTTAGCCACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTATATTCCCAGATTTATTAGATTTATTCCTTTGAACATAGAGCTCAAGAAGACAGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTACTATCTCCTATTGTACATGCTTGCCAGTCATATAGCGGGAGCATTCTGGTACTTGCTGGCAGTGGAGAGGAATGATGCATGTTGGCGCCAAGCATGTAGAAGCAGCGGAAAGTGCAACATTAACTATTTGTATTGTGGGAATAAGCACATGGCCGGTTATAAGGCTTGGAGAAATATAAGCGTTGATGTTCTCACCAAGAAATGCACCGCCGTGGGAGACAATTTGCCTTTCAACTATGGCATTTACACTCAGGCCATTTCCTCAGGCATTGTTCAGTCCAGGACTTTCTTCTCCAAGTTCTGCTATTGCTTGTGGTGGGGCTTGCAAAATTTAAGTACACTTGGTCAGGGGCTGCTTACCAGTACCTATCCTGGGGAGGTTATCTTTTCTATCCTAATTGCAATTTCTGGGCTCCTCCTTTTTGCACTCTTGATTGGAAACATGCAAACGTACCTTCAATCTCTAACAGTTCGACTTGAAGAGATGCGCATCAAGAGGAGAGATTCTGAGCAATGGATGCACCATCGACTGCTTCCACCAGACTTGAGAGAAAAAGTTAGGCGCTATGATCAGTACAAATGGCTAGAAACCAGAGGCGTTGATGAAGAGAGCTTGGTTCAAAGTCTGCCTAAAGATCTTAGGAGAGACATTAAACGGCATCTCTGTCTCAATTTGGTTAGAAGGGTATGCACTAATTTCATTACTTATTACGTTCTAGTTTTCAAACTAAAGCCAACATTATACACAGAGAACACATACATAGTACGAGAAGGCGACCCAGTCGACGAAATGCTCTTCATAATCCGTGGCCGCCTAGAGAGCGTCACGACCGACGGCGGCCGAAGCGGCTTCTACAACCGTGGCGTCTTAAAAGAAGGCGATTTCTGTGGCGAAGAGCTTTTAACGTGGGCCCTCGACCCCAAGTCCGGCTCCAACCTCCCCTCCTCCACTCGCACTGTCCACGCCCTCACCGAGGTTGAAGCCTTCGCCTTAGAGGCCGAGGAGCTCAAGTTCGTGGCCAGCCAGTTCCGACGCCTGCATAGTCGACAGGTTCAACACACCTTCAGATTCTACTCCCAGCAGTGGCGAACCTGGGCATCGTGTTTTATACAGGCGGCGTGGCGGCGGTATTTGAAGCGGAAGATTGCTGAGCTACGACGGAAGGAGGAGGAGGAAGAGGATGCTGCGGCGGTTGCAGCTGCGTTTAGCACGTCAAGGCTTGGGGCTACAATTTTGGCGTCGAGATTTGCGGCGAATGCGCTTAGAGGGCATCGATTGAGAAATGTGAGTGCGAAGAGCTTGATTAACTTGCAGAAGCCGGCGGAACCTGATTTTTCTGTGTATAAAGGAGAGTAA 2286 48.34 MFDCGGYKSQYIAGHKEKFVRYVLQFLNRTNRFTLSFFVHSRDFTFHGPRRLDDLDSNLSMSSGTSKMKKCRFNLEGLPLPFISRSKPQNASKSFRRGVQRSSDGIKTLGRSLRSGVSKVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSVDPLFFYLPVFNHASYCLGMDTKLAVTTTTVRTAIDVFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPTEIAQRYLQRYFIADFLSVLPLPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACRSSGKCNINYLYCGNKHMAGYKAWRNISVDVLTKKCTAVGDNLPFNYGIYTQAISSGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVCTNFITYYVLVFKLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFYNRGVLKEGDFCGEELLTWALDPKSGSNLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYLKRKIAELRRKEEEEEDAAAVAAAFSTSRLGATILASRFAANALRGHRLRNVSAKSLINLQKPAEPDFSVYKGE 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25336909 25342049 + Lsi03G014390.1 Lsi03g01439 659189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01439 761 Pfam Cyclic nucleotide-binding domain 558 647 IPR000595 -
Lsi03g01439 761 Gene3D Jelly Rolls 546 655 IPR014710 -
Lsi03g01439 761 Gene3D - 146 466 - -
Lsi03g01439 761 Coils Coil 685 705 - -
Lsi03g01439 761 ProSiteProfiles cAMP/cGMP binding motif profile. 549 667 IPR000595 -
Lsi03g01439 761 SMART cnmp_10 519 668 IPR000595 -
Lsi03g01439 761 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 46 758 - -
Lsi03g01439 761 SUPERFAMILY cAMP-binding domain-like 471 657 IPR018490 -
Lsi03g01439 761 ProSiteProfiles IQ motif profile. 673 702 IPR000048 GO:0005515
Lsi03g01439 761 Gene3D Helix hairpin bin 468 532 - -
Lsi03g01439 761 SUPERFAMILY Voltage-gated potassium channels 136 463 - -
Lsi03g01439 761 Pfam Ion transport protein 143 468 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi03g01439 761 CDD CAP_ED 549 668 IPR000595 -
Lsi03g01439 761 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 46 758 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01439 Lsi-Chr3:25336909 Lsi11g00684 Lsi-Chr11:7207436 0 dispersed
Lsi05g00083 Lsi-Chr5:1559095 Lsi03g01439 Lsi-Chr3:25336909 4.44E-16 dispersed
Lsi03g01439 Lsi-Chr3:25336909 Lsi03g01408 Lsi-Chr3:25030619 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01439 K05391 - csv:101221166 1300.8