Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01460 ATGATGGCAGGCTGTTCAATTAAGTTTGTGTTGGTGTTTGTTTCAATGGCTGTTCTTATGCCAACTCTAAGAGCTGCCATTGCTGAATATGATGACTTTTTGCTCCAAAAGGCTGAAGAAGCCAAGCAAGCGTCTCTTCAAGCCTTCCATCCTGACCCCATGAATGTCACTGACCATTTCAACCAACAAGTTCATTTAGCTTTGGAGGGAATAGAGGGAAACAATAGCACTAGGAGGAGTTTGAGGAAATACAACGGTCCGTGCTTGGCGACGAATCCGATTGATCGTTGCTGGCGTTGCGACCCAAATTGGGCCAAGAACCGTAAGAAGCTTGCCACTTGTGTGCTCGGTTTCGGCCGTAAGACCACCGGTGGCAAAAGAGGACGTATCTACGTTGTGACCGATCCATCGGATAACGATGTTATTAACCCTAAACCTGGAACCCTCCGATATGCTGCTATTCAAAAACGACCATTATGGATCATTTTTGGGCGCAGTATGATCATCAGGCTATCCAAGGAGTTGTTGATAGTCAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGTATTCAATTCTCAAGAAATGTGATCATCCATGGCCTTCACATCCACCACGTCATTTCAACCGGCGGTGGCATGATCCGAGATGGTGCTGACCATGTCGGACTTCGAACTGTTAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAATATCTGGCTCGATCATCTCTCCATGTCTAACTGTCAAGACGGACTCATCGACGCAATCCAAGGCTCTACCGCAATCACCATCTCAAACTCTCATTTCACTCATCATAATGATGTGATGTTATTCGGTGCAAGTGATGCATATCAAGGCGACTCGATCATGCAAGTAACCGTCGCGTTCAACCATTTTGGGAAGGGATTGGTGCAGAGAATGCCAAGATGTAGATGGGGTTTCTTCCATGTTGTCAACAATGATTACACTCACTGGCTCATGTATGCCATTGGTGGTAGTCAACATCCTACCATTATCAGTCAAGGAAACCGTTTCATTGCCCCACCCAACCCTGCTGCAAGACAGATTACGAACAGAAACTATGCAACAGAGAGTGTGTGGAGAACATGGACATGGAGATCGGAAGGGGATCTGATGATGAATGGAGCGTATTTCATTCAATCTGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACTTTTGTTAGAAGGCTTACACGCTTCTCTGGCTCACTCAACTGTTATATTGGTCGCCCATGCTAA 1326 46.53 MMAGCSIKFVLVFVSMAVLMPTLRAAIAEYDDFLLQKAEEAKQASLQAFHPDPMNVTDHFNQQVHLALEGIEGNNSTRRSLRKYNGPCLATNPIDRCWRCDPNWAKNRKKLATCVLGFGRKTTGGKRGRIYVVTDPSDNDVINPKPGTLRYAAIQKRPLWIIFGRSMIIRLSKELLIVSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVISTGGGMIRDGADHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDAYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYATESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYIGRPC 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25486590 25488810 + Lsi03G014600.1 Lsi03g01460 659210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01460 441 Pfam Pectate lyase, N terminus 27 81 IPR007524 GO:0030570
Lsi03g01460 441 Pfam Pectate lyase 182 357 IPR002022 -
Lsi03g01460 441 SUPERFAMILY Pectin lyase-like 92 431 IPR011050 -
Lsi03g01460 441 PANTHER PECTATE LYASE 18-RELATED 6 441 IPR045032 GO:0030570
Lsi03g01460 441 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Lsi03g01460 441 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Lsi03g01460 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Lsi03g01460 441 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Lsi03g01460 441 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Lsi03g01460 441 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Lsi03g01460 441 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Lsi03g01460 441 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Lsi03g01460 441 SMART amb_all 166 363 IPR002022 -
Lsi03g01460 441 PANTHER PECTATE LYASE 6 441 - -
Lsi03g01460 441 Gene3D - 91 434 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00312 Lsi-Chr2:2687334 Lsi03g01460 Lsi-Chr3:25486590 0 dispersed
Lsi03g01460 Lsi-Chr3:25486590 Lsi09g01161 Lsi-Chr9:18677108 2.19E-164 dispersed
Lsi08g00746 Lsi-Chr8:15800810 Lsi03g01460 Lsi-Chr3:25486590 0 transposed
Lsi03g01460 Lsi-Chr3:25486590 Lsi04g00455 Lsi-Chr4:4319274 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01460 K01728 - csv:101202789 845.884