Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01478 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCCCCATTTCCACAGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACACTGAAACCCCCATCAAAATCCAACCCATCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCCCAGGTGGTTTACAAAGAATGCCTCAAGAATCACGCTGCCAGTTTGGGCGGCCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACGGATCCCACCTCCCTAAAATGCGCCGCTTGCGGCTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTACTCCGACAACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCGCCGCCGCCCCCTGCGGCGGCGGCAGCCCACCGAAGCCCGAGTTCCGCCTCTCCTCCCCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCTGGCAGCGGCGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGATGAGGATATGATCCAAGAATTCTGCAGCGATGTCGGAGTTGACAGAGGGGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTCTCGGAAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGTGATGGGGACGGCGATGAGAAAATTAACGGCGGTGGCGAGCCACACGCCACCGCAAATGGGTCGTCTTCTTCCTCTTGA 897 57.19 MDLTPAISTAAAPISTGGGAVKSPELDTETPIKIQPITKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPAAAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDEKINGGGEPHATANGSSSSS 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25706181 25707077 - Lsi03G014780.1 Lsi03g01478 659228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01478 298 MobiDBLite consensus disorder prediction 1 56 - -
Lsi03g01478 298 MobiDBLite consensus disorder prediction 131 161 - -
Lsi03g01478 298 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 272 - -
Lsi03g01478 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Lsi03g01478 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 272 - -
Lsi03g01478 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 200 257 IPR006455 -
Lsi03g01478 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Lsi03g01478 298 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Lsi03g01478 298 MobiDBLite consensus disorder prediction 256 298 - -
Lsi03g01478 298 Gene3D - 193 261 - -
Lsi03g01478 298 SUPERFAMILY Homeodomain-like 193 261 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01513 Lsi-Chr2:21022402 Lsi03g01478 Lsi-Chr3:25706181 3.93E-35 dispersed
Lsi03g01478 Lsi-Chr3:25706181 Lsi11g00101 Lsi-Chr11:1088377 1.27E-54 dispersed
Lsi02g00260 Lsi-Chr2:2227870 Lsi03g01478 Lsi-Chr3:25706181 1.88E-41 transposed
Lsi02g01484 Lsi-Chr2:20585357 Lsi03g01478 Lsi-Chr3:25706181 3.92E-105 wgd
Lsi03g01478 Lsi-Chr3:25706181 Lsi04g00427 Lsi-Chr4:4081885 2.31E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25019 PF04770 ZF-HD_dimer 7.60E-29 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01478 - - csv:101204974 519.235