Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01478 | ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCCCCATTTCCACAGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACACTGAAACCCCCATCAAAATCCAACCCATCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCCCAGGTGGTTTACAAAGAATGCCTCAAGAATCACGCTGCCAGTTTGGGCGGCCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACGGATCCCACCTCCCTAAAATGCGCCGCTTGCGGCTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTACTCCGACAACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCGCCGCCGCCCCCTGCGGCGGCGGCAGCCCACCGAAGCCCGAGTTCCGCCTCTCCTCCCCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCTGGCAGCGGCGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGATGAGGATATGATCCAAGAATTCTGCAGCGATGTCGGAGTTGACAGAGGGGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTCTCGGAAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGTGATGGGGACGGCGATGAGAAAATTAACGGCGGTGGCGAGCCACACGCCACCGCAAATGGGTCGTCTTCTTCCTCTTGA | 897 | 57.19 | MDLTPAISTAAAPISTGGGAVKSPELDTETPIKIQPITKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPAAAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDEKINGGGEPHATANGSSSSS | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 25706181 | 25707077 | - | Lsi03G014780.1 | Lsi03g01478 | 659228 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01478 | 298 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Lsi03g01478 | 298 | MobiDBLite | consensus disorder prediction | 131 | 161 | - | - | |
Lsi03g01478 | 298 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 1 | 272 | - | - | |
Lsi03g01478 | 298 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 63 | 114 | IPR006456 | - | |
Lsi03g01478 | 298 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 1 | 272 | - | - | |
Lsi03g01478 | 298 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 200 | 257 | IPR006455 | - | |
Lsi03g01478 | 298 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 63 | 114 | IPR006456 | - | |
Lsi03g01478 | 298 | Pfam | ZF-HD protein dimerisation region | 61 | 115 | IPR006456 | - | |
Lsi03g01478 | 298 | MobiDBLite | consensus disorder prediction | 256 | 298 | - | - | |
Lsi03g01478 | 298 | Gene3D | - | 193 | 261 | - | - | |
Lsi03g01478 | 298 | SUPERFAMILY | Homeodomain-like | 193 | 261 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01513 | Lsi-Chr2:21022402 | Lsi03g01478 | Lsi-Chr3:25706181 | 3.93E-35 | dispersed | |
Lsi03g01478 | Lsi-Chr3:25706181 | Lsi11g00101 | Lsi-Chr11:1088377 | 1.27E-54 | dispersed | |
Lsi02g00260 | Lsi-Chr2:2227870 | Lsi03g01478 | Lsi-Chr3:25706181 | 1.88E-41 | transposed | |
Lsi02g01484 | Lsi-Chr2:20585357 | Lsi03g01478 | Lsi-Chr3:25706181 | 3.92E-105 | wgd | |
Lsi03g01478 | Lsi-Chr3:25706181 | Lsi04g00427 | Lsi-Chr4:4081885 | 2.31E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25019 | PF04770 | ZF-HD_dimer | 7.60E-29 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01478 | - | - | csv:101204974 | 519.235 |