Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01478 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCCCCATTTCCACAGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACACTGAAACCCCCATCAAAATCCAACCCATCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCCCAGGTGGTTTACAAAGAATGCCTCAAGAATCACGCTGCCAGTTTGGGCGGCCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACGGATCCCACCTCCCTAAAATGCGCCGCTTGCGGCTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTACTCCGACAACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCGCCGCCGCCCCCTGCGGCGGCGGCAGCCCACCGAAGCCCGAGTTCCGCCTCTCCTCCCCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCTGGCAGCGGCGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGATGAGGATATGATCCAAGAATTCTGCAGCGATGTCGGAGTTGACAGAGGGGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTCTCGGAAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGTGATGGGGACGGCGATGAGAAAATTAACGGCGGTGGCGAGCCACACGCCACCGCAAATGGGTCGTCTTCTTCCTCTTGA 897 57.19 MDLTPAISTAAAPISTGGGAVKSPELDTETPIKIQPITKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPAAAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDEKINGGGEPHATANGSSSSS 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25706181 25707077 - Lsi03G014780.1 Lsi03g01478 659228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01478 298 MobiDBLite consensus disorder prediction 1 56 - -
Lsi03g01478 298 MobiDBLite consensus disorder prediction 131 161 - -
Lsi03g01478 298 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 272 - -
Lsi03g01478 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Lsi03g01478 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 272 - -
Lsi03g01478 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 200 257 IPR006455 -
Lsi03g01478 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Lsi03g01478 298 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Lsi03g01478 298 MobiDBLite consensus disorder prediction 256 298 - -
Lsi03g01478 298 Gene3D - 193 261 - -
Lsi03g01478 298 SUPERFAMILY Homeodomain-like 193 261 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01478 - - - csv:101204974 519.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01513 Lsi-Chr2:21022402 Lsi03g01478 Lsi-Chr3:25706181 3.93E-35 dispersed
Lsi03g01478 Lsi-Chr3:25706181 Lsi11g00101 Lsi-Chr11:1088377 1.27E-54 dispersed
Lsi02g00260 Lsi-Chr2:2227870 Lsi03g01478 Lsi-Chr3:25706181 1.88E-41 transposed
Lsi02g01484 Lsi-Chr2:20585357 Lsi03g01478 Lsi-Chr3:25706181 3.92E-105 wgd
Lsi03g01478 Lsi-Chr3:25706181 Lsi04g00427 Lsi-Chr4:4081885 2.31E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25019 PF04770 ZF-HD_dimer 7.60E-29 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01478 Lsi_Chr03 FPKM 10.654978 13.715367 11.078975 11.922894 11.353148 9.928583 12.038349 17.953733 16.918169 17.926126