Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01481 ATGGCGAGAGAAATCCCTAAATCAAGCAATTGGAGCAGCGGCAATGAAGAGGCCTTAATCTCCGTGGGAAGCGAATACTCCGATCCTCAACAATCCTTCTTCCGCGACCGATTTTACGAACTTTACCCGCCGGAGTTCTCAAGAAAGCTTGTTGCGGAGGTGATTGCGACGTATTTGCTTGTGTTTGTGACGTGTGGGGCGGCGGCATTGAGTGTGAGTGATGAACGGGAAGTGTCGAAGCTTGGAGCGTCGATTACCGGTGGACTGATTGTGACGGTGATGATTTACGCCGTTGGACATATCTCCGGCGCTCATATGAATCCGGCGGTTACTTTTGCTTTTGCTGCTGTTCGGCGATTTCCTTGGAAACAGGTTCCACTGTATGCAGCAGCTCAATTAAGTGGAGCTACAACAGCAGCCTTTACACTGCGCATATTATTAGACCCAATTCAAGACTTAGGTACAACTTCACCTTCTGGACCAGCGTTTAAAGCACTTATCATGGAGATTGTTGTTTCATTTTGTATGATGTTCATCACTTCTGCGGTTGCTACCGACACGAAAGCGATAGGAGAGCTTGGAGGCATAGCAGTGGGGTCAGCTGCCAATATCGGGCGGGTCGATGAACCCAGCAAGGTCAATAGGACCAGCGATTGCAAGTTCACATTACGAAGGGATTTGGGTGTACCTGGTCGGCCCAGTTGCAGGAACATTGCTGGGGGCATTTTCATATAA 735 49.12 MAREIPKSSNWSSGNEEALISVGSEYSDPQQSFFRDRFYELYPPEFSRKLVAEVIATYLLVFVTCGAAALSVSDEREVSKLGASITGGLIVTVMIYAVGHISGAHMNPAVTFAFAAVRRFPWKQVPLYAAAQLSGATTAAFTLRILLDPIQDLGTTSPSGPAFKALIMEIVVSFCMMFITSAVATDTKAIGELGGIAVGSAANIGRVDEPSKVNRTSDCKFTLRRDLGVPGRPSCRNIAGGIFI 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25767201 25770731 - Lsi03G014810.1 Lsi03g01481 659231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01481 244 PANTHER AQUAPORIN NIP2-1 10 205 IPR034294 -
Lsi03g01481 244 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lsi03g01481 244 Gene3D Glycerol uptake facilitator protein. 21 205 IPR023271 -
Lsi03g01481 244 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01481 244 PRINTS Major intrinsic protein family signature 48 67 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01481 244 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01481 244 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01481 244 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 10 205 - -
Lsi03g01481 244 Pfam Major intrinsic protein 44 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01481 244 SUPERFAMILY Aquaporin-like 39 201 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01481 Lsi-Chr3:25767201 Lsi05g00309 Lsi-Chr5:3961833 2.50E-09 dispersed
Lsi03g01480 Lsi-Chr3:25765051 Lsi03g01481 Lsi-Chr3:25767201 6.84E-47 tandem
Lsi03g01481 Lsi-Chr3:25767201 Lsi03g01482 Lsi-Chr3:25812518 2.02E-49 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01481 K09874 - csv:101205456 305.064