Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01489 ATGGAGAAGTTGAAGGAAATGTTCCCAGCATTCTCCAAGAGTTGTGGAGAGATGGTTAACAAATGGGAAAAGATGATTCCTGAAGAAGGATGTTGTGAAATAGATGTGTGGCCTGATTTGCAAAATATGGCTGCAGATGTGATTTCTAGAACTGCATTTGGAAGTAGTTTTGAGGAAGGAAAAAAGATTTTCCAGCTCTTGAAAGAGTGGGCTAAGCTATTGATGACATACCTAACAAAAAGAGCTTATTACATTCCAGGGTTTAGGTATATACCAACAAAATTAAACAAGAGGATGGAAGAGATTGATAGGAAAATACGAGATATGGTTTGGGGTATTATAAGCAAAAGACAAAATGGTATGAAGAAAGGTGAAGCTTCCAATAATGAAGATCTATTACGCATCCTTTTAGAATCAAATGCAAGTCAAATTGAAGAACAAAAAATCAAGAATAAAGAAGTTGGAATGAGCATTGAAGAAGTAATAAGTGAATGCAGACTTTTCTATTTTGCTGGCCAAGAAACCACAGCTGCATTGCTTGCTTGGACAATGGTTCTACTTGGTCGATATTCAGAGTGGCAAGATCGAGCAAGAGCAGAAGTCTTGGAGGTTTTTGGTGATAACAACAAATTGGATTTTGATGGTCTAAGTCGTCTAAAAATAGTAACTATGATACTAAATGAAGTTCTTAGGCTATATCCTCCTGTTGGAATGCTAGCTCGAGAGCTTCACAATGAAACAAAATTGGAGAATTTGACATTACCAGTTGGAGTATCAATAGGAATACCAATTTTATGCATACACCGAGATTCCAAAATATGGGGTGAAGATGCAAGTGAGTTCAAACCAGAAAGATTTTCGGAAGGAATTTCTAAAGCAACAAAGAATCAAGTATGCTTTATCCCTTTTGGATGGGGTCCTCGAATTTGTGTTGGTCAAAATTTTGCAATGATTGAAGCCAAAATAGCATTATCCATGATTTTGCAACAATTCTCATTTACAATTTCTCCAACTTATACTCATGCTCCTATCTCAAACATCACTATTCAGCCACAACATGGGGCTCATCTCATCCTTCGTAAGCTGTAA 1089 36.73 MEKLKEMFPAFSKSCGEMVNKWEKMIPEEGCCEIDVWPDLQNMAADVISRTAFGSSFEEGKKIFQLLKEWAKLLMTYLTKRAYYIPGFRYIPTKLNKRMEEIDRKIRDMVWGIISKRQNGMKKGEASNNEDLLRILLESNASQIEEQKIKNKEVGMSIEEVISECRLFYFAGQETTAALLAWTMVLLGRYSEWQDRARAEVLEVFGDNNKLDFDGLSRLKIVTMILNEVLRLYPPVGMLARELHNETKLENLTLPVGVSIGIPILCIHRDSKIWGEDASEFKPERFSEGISKATKNQVCFIPFGWGPRICVGQNFAMIEAKIALSMILQQFSFTISPTYTHAPISNITIQPQHGAHLILRKL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25926767 25930487 + Lsi03G014890.1 Lsi03g01489 659239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01489 362 SUPERFAMILY Cytochrome P450 3 360 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01489 362 Gene3D Cytochrome P450 1 362 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01489 362 PRINTS E-class P450 group I signature 180 206 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01489 362 PRINTS E-class P450 group I signature 310 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01489 362 PRINTS E-class P450 group I signature 300 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01489 362 PRINTS E-class P450 group I signature 43 61 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01489 362 PRINTS E-class P450 group I signature 160 177 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01489 362 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 303 312 IPR017972 GO:0005506|GO:0016705
Lsi03g01489 362 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 353 - -
Lsi03g01489 362 PANTHER CYTOCHROME P450 72A11-RELATED 1 353 - -
Lsi03g01489 362 Pfam Cytochrome P450 3 346 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01489 362 PRINTS P450 superfamily signature 310 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01489 362 PRINTS P450 superfamily signature 171 188 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01489 362 PRINTS P450 superfamily signature 301 310 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01489 362 PRINTS P450 superfamily signature 224 235 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01489 Lsi-Chr3:25926767 Lsi04g01957 Lsi-Chr4:26673143 5.07E-171 dispersed
Lsi03g01489 Lsi-Chr3:25926767 Lsi03g01491 Lsi-Chr3:25937322 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01489 - - csv:101207867 642.499