Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01491 ATGATATTCCCATCTTCTTTTCCCTTTAGAAGAAGAAAGGGAGGTGGGCTCGCCTCTCTCGAGGGACCTAAATGGGCTAAACACACAAAGATCATCAACCCTGCATTTCACACGGAGAAGTTGAAGGAAATGTTTCCAGCATTCTCCCAGAGTTGTACGGAAATGGTTAATAAATGGGAAATGATGGTTCCTGCTGAAGAAGGATGTTGTGAAATTGATGTGTGGCCTGATGTGCAAAACATGGCTGCAGATGTGATTTCTAGAACTGCATTTGGAAGTAATTTTGAGGAAGGAAAAAAGATCTTCCAGCTCTTGAAAGAGTCGGCTTCGCTGTTCATGACATACCTAACAAATAGAGTTTATTTCATTCCAGGGTTTAGGTATATACCAACTAAATTGAACAAGAGGATGAAAGAGATTGATAGAAAAATACAAGATATGATCTGGGGTATTATAAGCAAAAGACAAAATGATATGAAGAAAGGTGAAGCTTCCAATAATGAAGATCTATTAGGCATCCTTTTAGAATCAAATGCAAGTCAAATTGAAGAACAAACAAACAAGAAAGAAGTTGGAATGAGCATAGAAGAAGTAATAAATGAATGCAGGCTTTTCTATTTTGCTGGCCAAGAAACCACAGCTGCAATGTTTGTTTGGACAATGGTTCTACTTGGTCGATACTCAGAGTGGCAAGATCGAGCAAGAGCAGAAGTCTTGGAGGTTTTTGGTTATAACAACAAATTGGATTTTGTTGGTCTAAGTCGTCAAAGAGTAAGTATGATACTAAATGAAGTTCTTAGGCTATACCCTCCAGCTGGAATGCTAGTTCGAGATATTCACAATGAAACACAATTGGAAAATTTGACATTACCAGTTGGAGTATCAATAGGAATACCAATTTTATGCATACACCAAGATCCCAAAATATGGGGTGAAGATGCAAGTGAGTTCAAACTAGAAAGATTTTCAGAAGGAATTTCTAAAGTAACAAAGAATCAAGTATGCTCTATCCCTTTTGGATGGGGTCCTCGAATTTGTGTTGGTCAAAACTTTGCAATGATTGAAGCCAAAATAGCATTATCCATGATTTTGCAACAATTCTCATTTACACTTTCTCCAACTTATACTCATGCTCCTATCTCAAACATTACTATTCAGCCACAACATGGGGCTCATCTCATCTTTCGTAAGCTATAA 1197 37.51 MIFPSSFPFRRRKGGGLASLEGPKWAKHTKIINPAFHTEKLKEMFPAFSQSCTEMVNKWEMMVPAEEGCCEIDVWPDVQNMAADVISRTAFGSNFEEGKKIFQLLKESASLFMTYLTNRVYFIPGFRYIPTKLNKRMKEIDRKIQDMIWGIISKRQNDMKKGEASNNEDLLGILLESNASQIEEQTNKKEVGMSIEEVINECRLFYFAGQETTAAMFVWTMVLLGRYSEWQDRARAEVLEVFGYNNKLDFVGLSRQRVSMILNEVLRLYPPAGMLVRDIHNETQLENLTLPVGVSIGIPILCIHQDPKIWGEDASEFKLERFSEGISKVTKNQVCSIPFGWGPRICVGQNFAMIEAKIALSMILQQFSFTLSPTYTHAPISNITIQPQHGAHLIFRKL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25937322 25939880 + Lsi03G014910.1 Lsi03g01491 659241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01491 398 PANTHER CYTOCHROME P450 FAMILY MEMBER 10 389 - -
Lsi03g01491 398 Gene3D Cytochrome P450 2 398 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 PRINTS E-class P450 group I signature 81 99 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 PRINTS E-class P450 group I signature 197 214 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 PRINTS E-class P450 group I signature 346 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 PRINTS E-class P450 group I signature 217 243 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 PRINTS E-class P450 group I signature 336 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 PRINTS E-class P450 group I signature 259 277 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 Pfam Cytochrome P450 11 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 PANTHER CYTOCHROME P450 72A11-RELATED 10 389 - -
Lsi03g01491 398 SUPERFAMILY Cytochrome P450 9 396 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 339 348 IPR017972 GO:0005506|GO:0016705
Lsi03g01491 398 PRINTS P450 superfamily signature 260 271 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 PRINTS P450 superfamily signature 208 225 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01491 398 PRINTS P450 superfamily signature 337 346 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01491 Lsi-Chr3:25937322 Lsi04g01957 Lsi-Chr4:26673143 3.91E-176 dispersed
Lsi03g01489 Lsi-Chr3:25926767 Lsi03g01491 Lsi-Chr3:25937322 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01491 - - csv:101207867 649.047