Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01499 ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGGAAGACGATTTCTCTACCGGAGGCTTCTCCGGCCACTCCTCAGCTTACATCTTCTTTACCTATTCTCACTGCCGGTGACGATAACACCGCCGCTGTTAATCATGACCACGATTCTTCTTCTTCAAGCTTGTCCCCGGAAGCCAATATCGATGGGGATGGTGAAGATCTGGAGGTCGATAAGGAGACTATAAGAGGCAAATCAGGTGGAACTAAGCTGGAAGATGGAGATGGAGATAGAGATGGAGATGGAGGCTTGTCTGCTTCGACTGAAGAGTTTACAAATTCGGATACTTCTGCGGTGAGATCGGAGAATTCTAAAGTACTTTCTGGTGAGGAAAGTAATCCGTCGGGTACTACAAAGATTGATGAACAGAATGAAACAAGTAACTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCGTGTCCTCGCTGTAACAGTATGGATACTAAGTTCTGTTACTATAATAACTACAATGTTAATCAACCGCGCCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGAGGGACAATGAGGAACGTTCCTGTGGGTGCGGGACGTCGTAAGAACAAAAGCTCTGCTTCTCACCATCGTCAGATTATTGTTTCGGAAGCGCTTCAGCATGCTCGAACTGATGTTTCTAATGGTATCCATCATTCTACCCTCAAACCTAATGGCAATGTATTGGCATTTGGTTCAGACGCCCCTCTTTGTGAATCAATGGCTTCCATTTTAAACATTGCTGATAAAACAAGGCAGAATAGTACTAGAAATGGCTTTAAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAAGGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAAATAATGAAGAAGGCAAAACTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGCTTTTTACCACCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACACTGGAGCTCTCCTGTTCCACCTCCTACTTTCTATCCATCAGGCATTCCTATGCCGTTCTATCCGACCGCTCCATTTTGGGGTTGTACGGTTCCCGGCGCCTGGACCGTCCCATGGGTTTCCCAGCCGCCATCTTTAAACCCTGTTGCCCAAAACCATGCTCCTAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGACCAAGCAAAGCGATTTTGGGGAAGACGAGCAGCAGAAAGATAACAAAGCTGAGAGATGTCTTTGGATACCAAAAACGTTGAGGATCGACGACCCTGGCGAAGCAGCTAAAAGCTCCATATGGGCAACTCTGGGAATAAAAAATGACAAGACTGATTCAGTCAGTGAAGGGCTTTTCAAGGCTTTTCAATCAAAGAAGATCGACGAAAAGAATCACAAAACCGAAGCCTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCCAGATCAATCAAATTTCATGAAAGCTCATAA 1545 45.11 MSEPKDPAIKLFGKTISLPEASPATPQLTSSLPILTAGDDNTAAVNHDHDSSSSSLSPEANIDGDGEDLEVDKETIRGKSGGTKLEDGDGDRDGDGGLSASTEEFTNSDTSAVRSENSKVLSGEESNPSGTTKIDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHHRQIIVSEALQHARTDVSNGIHHSTLKPNGNVLAFGSDAPLCESMASILNIADKTRQNSTRNGFKKPEALKIPVAYEKGENDDQSQESAATPSFINNEEGKTGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPHWSSPVPPPTFYPSGIPMPFYPTAPFWGCTVPGAWTVPWVSQPPSLNPVAQNHAPNSPTLGKHSRDENVTKQSDFGEDEQQKDNKAERCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKIDEKNHKTEASPVLQVNPAALSRSIKFHESS 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25996052 25998757 - Lsi03G014990.1 Lsi03g01499 659249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01499 514 MobiDBLite consensus disorder prediction 100 138 - -
Lsi03g01499 514 PANTHER CYCLIC DOF FACTOR 2 1 513 IPR045174 GO:0003700|GO:0006355
Lsi03g01499 514 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 513 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 1 153 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 412 434 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 298 314 - -
Lsi03g01499 514 ProSiteProfiles Zinc finger Dof-type profile. 155 209 IPR003851 GO:0003677|GO:0006355
Lsi03g01499 514 Pfam Dof domain, zinc finger 152 209 IPR003851 GO:0003677|GO:0006355
Lsi03g01499 514 MobiDBLite consensus disorder prediction 139 153 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 70 98 - -
Lsi03g01499 514 ProSitePatterns Zinc finger Dof-type signature. 157 193 IPR003851 GO:0003677|GO:0006355
Lsi03g01499 514 MobiDBLite consensus disorder prediction 394 411 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 20 37 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 394 434 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 291 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01499 - - - cmo:103486992 961.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00077 Lsi-Chr2:668006 Lsi03g01499 Lsi-Chr3:25996052 2.77E-112 dispersed
Lsi03g01499 Lsi-Chr3:25996052 Lsi06g01460 Lsi-Chr6:25140536 7.38E-136 dispersed
Lsi03g01577 Lsi-Chr3:26782293 Lsi03g01499 Lsi-Chr3:25996052 8.03E-74 transposed
Lsi03g01499 Lsi-Chr3:25996052 Lsi04g00411 Lsi-Chr4:3996573 5.51E-92 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00805 CCT 16 176 C2C2-Dof Transcription Factor Family AT1G29160 58.3 9.8e-45 176.8
Lsi01g00243 CCT 6 162 C2C2-Dof Transcription Factor Family AT1G29160 50.9 2.8e-39 158.7
Lsi02g00805 CCT 16 174 C2C2-Dof Transcription Factor Family AT2G34140 56.5 6.8e-43 170.6
Lsi03g02101 CCT,ECH 46 178 C2C2-Dof Transcription Factor Family AT2G37590 68.1 6.6e-42 168.3
Lsi04g00882 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 8.0e-40 161.4
Lsi02g01651 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 63.3 3.4e-38 156.0
Lsi02g01364 . 64 138 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Lsi03g01499 . 135 514 C2C2-Dof Transcription Factor Family AT5G39660 52.5 1.2e-81 300.8
Lsi02g01364 . 65 138 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.3e-38 155.6
Lsi01g01417 CCT,ECH 51 124 C2C2-Dof Transcription Factor Family AT5G02460 87.8 5.9e-37 152.1
Lsi04g00882 . 55 236 C2C2-Dof Transcription Factor Family AT3G55370 50.7 2.1e-41 166.8
Lsi02g01364 . 49 142 C2C2-Dof Transcription Factor Family AT3G55370 76.6 3.4e-39 159.5
Lsi03g02101 CCT,ECH 99 181 C2C2-Dof Transcription Factor Family AT3G55370 79.5 1.2e-36 151.0
Lsi06g01388 CCT 28 328 C2C2-Dof Transcription Factor Family AT5G60850 51.9 9.1e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008734 0 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25020 PF02701 zf-Dof 2.20E-32 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g01499 Lsi_Chr03 FPKM 0.774603 0.0 0.0 1.262391 0.0 3.136149 2.505964 2.883743 1.159396 1.69459