Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01499 ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGGAAGACGATTTCTCTACCGGAGGCTTCTCCGGCCACTCCTCAGCTTACATCTTCTTTACCTATTCTCACTGCCGGTGACGATAACACCGCCGCTGTTAATCATGACCACGATTCTTCTTCTTCAAGCTTGTCCCCGGAAGCCAATATCGATGGGGATGGTGAAGATCTGGAGGTCGATAAGGAGACTATAAGAGGCAAATCAGGTGGAACTAAGCTGGAAGATGGAGATGGAGATAGAGATGGAGATGGAGGCTTGTCTGCTTCGACTGAAGAGTTTACAAATTCGGATACTTCTGCGGTGAGATCGGAGAATTCTAAAGTACTTTCTGGTGAGGAAAGTAATCCGTCGGGTACTACAAAGATTGATGAACAGAATGAAACAAGTAACTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCGTGTCCTCGCTGTAACAGTATGGATACTAAGTTCTGTTACTATAATAACTACAATGTTAATCAACCGCGCCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGAGGGACAATGAGGAACGTTCCTGTGGGTGCGGGACGTCGTAAGAACAAAAGCTCTGCTTCTCACCATCGTCAGATTATTGTTTCGGAAGCGCTTCAGCATGCTCGAACTGATGTTTCTAATGGTATCCATCATTCTACCCTCAAACCTAATGGCAATGTATTGGCATTTGGTTCAGACGCCCCTCTTTGTGAATCAATGGCTTCCATTTTAAACATTGCTGATAAAACAAGGCAGAATAGTACTAGAAATGGCTTTAAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAAGGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAAATAATGAAGAAGGCAAAACTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGCTTTTTACCACCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACACTGGAGCTCTCCTGTTCCACCTCCTACTTTCTATCCATCAGGCATTCCTATGCCGTTCTATCCGACCGCTCCATTTTGGGGTTGTACGGTTCCCGGCGCCTGGACCGTCCCATGGGTTTCCCAGCCGCCATCTTTAAACCCTGTTGCCCAAAACCATGCTCCTAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGACCAAGCAAAGCGATTTTGGGGAAGACGAGCAGCAGAAAGATAACAAAGCTGAGAGATGTCTTTGGATACCAAAAACGTTGAGGATCGACGACCCTGGCGAAGCAGCTAAAAGCTCCATATGGGCAACTCTGGGAATAAAAAATGACAAGACTGATTCAGTCAGTGAAGGGCTTTTCAAGGCTTTTCAATCAAAGAAGATCGACGAAAAGAATCACAAAACCGAAGCCTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCCAGATCAATCAAATTTCATGAAAGCTCATAA 1545 45.11 MSEPKDPAIKLFGKTISLPEASPATPQLTSSLPILTAGDDNTAAVNHDHDSSSSSLSPEANIDGDGEDLEVDKETIRGKSGGTKLEDGDGDRDGDGGLSASTEEFTNSDTSAVRSENSKVLSGEESNPSGTTKIDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHHRQIIVSEALQHARTDVSNGIHHSTLKPNGNVLAFGSDAPLCESMASILNIADKTRQNSTRNGFKKPEALKIPVAYEKGENDDQSQESAATPSFINNEEGKTGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPHWSSPVPPPTFYPSGIPMPFYPTAPFWGCTVPGAWTVPWVSQPPSLNPVAQNHAPNSPTLGKHSRDENVTKQSDFGEDEQQKDNKAERCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKIDEKNHKTEASPVLQVNPAALSRSIKFHESS 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25996052 25998757 - Lsi03G014990.1 Lsi03g01499 659249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01499 514 MobiDBLite consensus disorder prediction 100 138 - -
Lsi03g01499 514 PANTHER CYCLIC DOF FACTOR 2 1 513 IPR045174 GO:0003700|GO:0006355
Lsi03g01499 514 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 513 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 1 153 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 412 434 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 298 314 - -
Lsi03g01499 514 ProSiteProfiles Zinc finger Dof-type profile. 155 209 IPR003851 GO:0003677|GO:0006355
Lsi03g01499 514 Pfam Dof domain, zinc finger 152 209 IPR003851 GO:0003677|GO:0006355
Lsi03g01499 514 MobiDBLite consensus disorder prediction 139 153 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 70 98 - -
Lsi03g01499 514 ProSitePatterns Zinc finger Dof-type signature. 157 193 IPR003851 GO:0003677|GO:0006355
Lsi03g01499 514 MobiDBLite consensus disorder prediction 394 411 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 20 37 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 394 434 - -
Lsi03g01499 514 MobiDBLite consensus disorder prediction 291 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00077 Lsi-Chr2:668006 Lsi03g01499 Lsi-Chr3:25996052 2.77E-112 dispersed
Lsi03g01499 Lsi-Chr3:25996052 Lsi06g01460 Lsi-Chr6:25140536 7.38E-136 dispersed
Lsi03g01577 Lsi-Chr3:26782293 Lsi03g01499 Lsi-Chr3:25996052 8.03E-74 transposed
Lsi03g01499 Lsi-Chr3:25996052 Lsi04g00411 Lsi-Chr4:3996573 5.51E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25020 PF02701 zf-Dof 2.20E-32 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01499 - - cmo:103486992 961.829