Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01514 ATGCGCCCAATCTTGATGAAAGGCCATGAACGGCCATTAACTTTCCTCAAGTACAATCGGGATGGCGATCTTCTTTTCTCCTGCGCCAAGGATCACAACCCCACCATCTGGTACGCCGATAACGGCGAGCGATTGGGGACTTATCGTGGTCATAATGGTGCCGTTTGGTGCTGTGATGTCTCCAGAGATTCAATGCGGCTTATCACTGGAAGTGCGGATCAGACGGCAAAATTGTGGAATGTACAAACTGGACAGCAACTCTTCTCCTTCAATTTCGATTCACCTGCTAGGGCAGTTGATTTCTCTGTCGGCGATAAGCTTGCAGTTATTACCACTGATCCTTTCATGGAGTTGCCTTCTGCTATTCATGTTAAACGGATTGCCAGAGACCCCTCGGAACAGACTGGTGAATCTGTGCTCGTTCTTAAGGGTCCCCAAGGAAGAATCAATAGAGCTGTTTGGGGGCCTCTAAATAAGACCATTATAAGTGCAGGAGAAGATGCTGTTATTCGCATTTGGGATTCTGAGACAGGTAAACTTCTGAAAGAATCAGACAAGGAGACAGGCCATAAGAAAACAATAACTTCCCTTACAAAATCCTCTGATGGTTCACATTTTATCACTGGTTCTTTGGACAAGTCTGCAAGGCTGTGGGATATCAGAACATTGACGCTTATCAAGACATATGTGACAGAACGCCCAGTCAATGCAGTTACGATGTCTCCACTTCTTGATCATGTGGTGCTTGGTGGTGGTCAGGATGCTTCAGCTGTGACAACAACTGATCATCGTGCAGGAAAGTTTGAAGCTAAATTTTTTGACAAGATCCTTCAAGAAGAGATTGGAGGTGTGAAAGGGCATTTTGGACCCATCAATGCTCTGGCTTTCAATCCCGATGGAAAGAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTAAGACTGCATCATTTTGACCCCGATTACTTCAACATCAAGATTTAA 981 44.95 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTIWYADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIARDPSEQTGESVLVLKGPQGRINRAVWGPLNKTIISAGEDAVIRIWDSETGKLLKESDKETGHKKTITSLTKSSDGSHFITGSLDKSARLWDIRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26156139 26160946 + Lsi03G015140.1 Lsi03g01514 659264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01514 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Lsi03g01514 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 314 IPR001680 GO:0005515
Lsi03g01514 326 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 326 IPR027525 GO:0003743|GO:0005737|GO:0005852
Lsi03g01514 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Lsi03g01514 326 Pfam WD domain, G-beta repeat 138 174 IPR001680 GO:0005515
Lsi03g01514 326 Pfam WD domain, G-beta repeat 283 314 IPR001680 GO:0005515
Lsi03g01514 326 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Lsi03g01514 326 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Lsi03g01514 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Lsi03g01514 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Lsi03g01514 326 SUPERFAMILY WD40 repeat-like 4 314 IPR036322 GO:0005515
Lsi03g01514 326 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Lsi03g01514 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 314 - -
Lsi03g01514 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Lsi03g01514 326 SMART WD40_4 41 80 IPR001680 GO:0005515
Lsi03g01514 326 SMART WD40_4 177 219 IPR001680 GO:0005515
Lsi03g01514 326 SMART WD40_4 222 261 IPR001680 GO:0005515
Lsi03g01514 326 SMART WD40_4 1 38 IPR001680 GO:0005515
Lsi03g01514 326 SMART WD40_4 277 316 IPR001680 GO:0005515
Lsi03g01514 326 SMART WD40_4 135 174 IPR001680 GO:0005515
Lsi03g01514 326 Gene3D - 1 326 IPR015943 GO:0005515
Lsi03g01514 326 CDD WD40 7 314 - -
Lsi03g01514 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Lsi03g01514 326 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Lsi03g01514 326 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Lsi03g01514 326 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Lsi03g01514 326 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Lsi03g01514 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Lsi03g01514 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Lsi03g01514 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01514 Lsi-Chr3:26156139 Lsi06g00926 Lsi-Chr6:19115093 2.27E-42 dispersed
Lsi03g01514 Lsi-Chr3:26156139 Lsi02g02285 Lsi-Chr2:29422484 3.78E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01514 K03246 - csv:101211648 659.833