Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01516 ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGAAAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCAAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATCACTGATCATGTACTAGCAATGTCATTCCCTGCAGAACGAATGCGCGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCGTATGATCCATCACATTTTCATGGGCGCGTGGAGTTGTTTCCTTTCGATGATAATCATGTTCCACCACTAGAGATGATCAAAATCTTTTGTGAAAATGTCTCTTCATGGCTATCGTCCCACCCAAAGAATATTGCAGTTATACATTGCATGGCTGGGAAAGGTCGAACAGGATTGATGGTATGTGCCTACTTGGTTTACTGTGGCATGTCAGTGGAGGATGCACTTCAGCTGTATGCTCAGAGACGGACGACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAGTTTATAATGGACCTCCTGAGGTGAACTTGCCCGAACCATGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTCGTGGTCTCAGAATTGCAGGAGGTTTCTTCTCAGTTATACCGTCCATCTATGGAACTTACCAGGAGTTGTTGCAGACAATTTAAGAGAGGATATGAGAGAAGTAACAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACGAGTCCGAAGTAGAGCCCCATCTTATTGTTCAAATGGATACTGAGTCTTCCGCACTGTACCACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTAACTGGAGATGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAGTTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAATACTCGTTTTCGACTTCATCCGATGACGAAGATCCTCAAAATGATTTGTCCTAA 1248 43.19 MGIKFSKPNQGKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVELFPFDDNHVPPLEMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGVYNGPPEVNLPEPCRRELQRIRLYDTVNTESIFFVVSELQEVSSQLYRPSMELTRSCCRQFKRGYERSNSPRYFLSFVEGENEGNESEVEPHLIVQMDTESSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSVCGPSFCLELVFGPANAKYSFSTSSDDEDPQNDLS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26173837 26179614 + Lsi03G015160.1 Lsi03g01516 659266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01516 415 PANTHER BNAC03G16750D PROTEIN 1 407 - -
Lsi03g01516 415 Gene3D - 275 397 - -
Lsi03g01516 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Lsi03g01516 415 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Lsi03g01516 415 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Lsi03g01516 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 295 394 IPR035892 -
Lsi03g01516 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 125 184 IPR000387 GO:0016311|GO:0016791
Lsi03g01516 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Lsi03g01516 415 Pfam C2 domain of PTEN tumour-suppressor protein 317 392 IPR014020 -
Lsi03g01516 415 CDD PTP_PTEN 51 205 IPR045101 GO:0016791
Lsi03g01516 415 Pfam Tyrosine phosphatase family 146 186 IPR026893 GO:0004721
Lsi03g01516 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 407 - -
Lsi03g01516 415 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Lsi03g01516 415 SMART PTEN_C2_2 223 394 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01516 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - csv:101212127 799.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00954 Lsi-Chr1:7754241 Lsi03g01516 Lsi-Chr3:26173837 7.16E-28 dispersed
Lsi03g01516 Lsi-Chr3:26173837 Lsi03g00522 Lsi-Chr3:6061136 2.18E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi02g01949 . 90 390 Protein tyrosine phosphatase (PTP) family AT1G71860 62.6 6.4e-109 391.0
Lsi06g01680 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.8 0.0e+00 1092.8
Lsi11g01661 . 1 192 Protein tyrosine phosphatase (PTP) family AT2G04550 67.2 4.2e-67 251.1
Lsi04g00121 . 96 317 Protein tyrosine phosphatase (PTP) family AT3G52180 58.0 1.2e-84 310.1
Lsi04g01038 . 29 275 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 8.5e-107 383.6
Lsi03g01385 . 139 540 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.2e-183 637.5
Lsi10g01569 CCT 9 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.9 1.0e-74 276.9
Lsi11g01669 CCT 28 213 Protein tyrosine phosphatase (PTP) family AT2G32960 56.5 3.0e-58 222.2
Lsi06g00702 . 44 215 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 5.3e-55 211.5
Lsi11g00210 . 20 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.9 1.3e-80 297.0
Lsi07g01277 . 23 282 Protein tyrosine phosphatase (PTP) family AT2G35680 57.3 6.2e-80 294.7
Lsi11g00210 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.5e-46 180.3
Lsi10g01569 CCT 18 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.6 7.6e-78 287.0
Lsi06g00702 . 58 215 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.4e-58 223.0
Lsi11g01669 CCT 37 214 Protein tyrosine phosphatase (PTP) family AT4G03960 55.8 1.8e-55 212.6
Lsi06g00702 . 52 241 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.4e-79 292.0
Lsi10g01569 CCT 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.3e-56 216.5
Lsi04g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 66.1 2.5e-63 240.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi03g00522 . 14 730 Protein tyrosine phosphatase (PTP) family AT3G19420 52.3 1.4e-191 666.4
Lsi01g00954 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 50.7 7.1e-159 557.8
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi10g01181 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 3.8e-69 258.5
Lsi07g01214 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 2.0e-109 392.5
Lsi01g01523 . 1 669 Protein tyrosine phosphatase (PTP) family AT3G09100 60.6 1.1e-245 846.3
Lsi01g01523 . 5 669 Protein tyrosine phosphatase (PTP) family AT5G01290 56.6 1.6e-220 762.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006631 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 38