Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01516 ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGAAAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCAAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATCACTGATCATGTACTAGCAATGTCATTCCCTGCAGAACGAATGCGCGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCGTATGATCCATCACATTTTCATGGGCGCGTGGAGTTGTTTCCTTTCGATGATAATCATGTTCCACCACTAGAGATGATCAAAATCTTTTGTGAAAATGTCTCTTCATGGCTATCGTCCCACCCAAAGAATATTGCAGTTATACATTGCATGGCTGGGAAAGGTCGAACAGGATTGATGGTATGTGCCTACTTGGTTTACTGTGGCATGTCAGTGGAGGATGCACTTCAGCTGTATGCTCAGAGACGGACGACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAGTTTATAATGGACCTCCTGAGGTGAACTTGCCCGAACCATGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTCGTGGTCTCAGAATTGCAGGAGGTTTCTTCTCAGTTATACCGTCCATCTATGGAACTTACCAGGAGTTGTTGCAGACAATTTAAGAGAGGATATGAGAGAAGTAACAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACGAGTCCGAAGTAGAGCCCCATCTTATTGTTCAAATGGATACTGAGTCTTCCGCACTGTACCACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTAACTGGAGATGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAGTTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAATACTCGTTTTCGACTTCATCCGATGACGAAGATCCTCAAAATGATTTGTCCTAA 1248 43.19 MGIKFSKPNQGKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVELFPFDDNHVPPLEMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGVYNGPPEVNLPEPCRRELQRIRLYDTVNTESIFFVVSELQEVSSQLYRPSMELTRSCCRQFKRGYERSNSPRYFLSFVEGENEGNESEVEPHLIVQMDTESSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSVCGPSFCLELVFGPANAKYSFSTSSDDEDPQNDLS 415
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 26173837 26179614 + Lsi03G015160.1 Lsi03g01516 659266
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01516 415 PANTHER BNAC03G16750D PROTEIN 1 407 - -
Lsi03g01516 415 Gene3D - 275 397 - -
Lsi03g01516 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Lsi03g01516 415 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Lsi03g01516 415 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Lsi03g01516 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 295 394 IPR035892 -
Lsi03g01516 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 125 184 IPR000387 GO:0016311|GO:0016791
Lsi03g01516 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Lsi03g01516 415 Pfam C2 domain of PTEN tumour-suppressor protein 317 392 IPR014020 -
Lsi03g01516 415 CDD PTP_PTEN 51 205 IPR045101 GO:0016791
Lsi03g01516 415 Pfam Tyrosine phosphatase family 146 186 IPR026893 GO:0004721
Lsi03g01516 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 407 - -
Lsi03g01516 415 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Lsi03g01516 415 SMART PTEN_C2_2 223 394 IPR014020 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00954 Lsi-Chr1:7754241 Lsi03g01516 Lsi-Chr3:26173837 7.16E-28 dispersed
Lsi03g01516 Lsi-Chr3:26173837 Lsi03g00522 Lsi-Chr3:6061136 2.18E-42 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01516 K01110 - csv:101212127 799.66