Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g01516 | ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGAAAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCAAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATCACTGATCATGTACTAGCAATGTCATTCCCTGCAGAACGAATGCGCGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCGTATGATCCATCACATTTTCATGGGCGCGTGGAGTTGTTTCCTTTCGATGATAATCATGTTCCACCACTAGAGATGATCAAAATCTTTTGTGAAAATGTCTCTTCATGGCTATCGTCCCACCCAAAGAATATTGCAGTTATACATTGCATGGCTGGGAAAGGTCGAACAGGATTGATGGTATGTGCCTACTTGGTTTACTGTGGCATGTCAGTGGAGGATGCACTTCAGCTGTATGCTCAGAGACGGACGACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAGTTTATAATGGACCTCCTGAGGTGAACTTGCCCGAACCATGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTCGTGGTCTCAGAATTGCAGGAGGTTTCTTCTCAGTTATACCGTCCATCTATGGAACTTACCAGGAGTTGTTGCAGACAATTTAAGAGAGGATATGAGAGAAGTAACAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACGAGTCCGAAGTAGAGCCCCATCTTATTGTTCAAATGGATACTGAGTCTTCCGCACTGTACCACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTAACTGGAGATGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAGTTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAATACTCGTTTTCGACTTCATCCGATGACGAAGATCCTCAAAATGATTTGTCCTAA | 1248 | 43.19 | MGIKFSKPNQGKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVELFPFDDNHVPPLEMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGVYNGPPEVNLPEPCRRELQRIRLYDTVNTESIFFVVSELQEVSSQLYRPSMELTRSCCRQFKRGYERSNSPRYFLSFVEGENEGNESEVEPHLIVQMDTESSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSVCGPSFCLELVFGPANAKYSFSTSSDDEDPQNDLS | 415 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 26173837 | 26179614 | + | Lsi03G015160.1 | Lsi03g01516 | 659266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g01516 | 415 | PANTHER | BNAC03G16750D PROTEIN | 1 | 407 | - | - | |
| Lsi03g01516 | 415 | Gene3D | - | 275 | 397 | - | - | |
| Lsi03g01516 | 415 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 149 | 159 | IPR016130 | GO:0016311|GO:0016791 | |
| Lsi03g01516 | 415 | Gene3D | Protein tyrosine phosphatase superfamily | 28 | 209 | IPR029021 | - | |
| Lsi03g01516 | 415 | ProSiteProfiles | C2 tensin-type domain profile. | 241 | 395 | IPR014020 | - | |
| Lsi03g01516 | 415 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 295 | 394 | IPR035892 | - | |
| Lsi03g01516 | 415 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 125 | 184 | IPR000387 | GO:0016311|GO:0016791 | |
| Lsi03g01516 | 415 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 49 | 207 | IPR029021 | - | |
| Lsi03g01516 | 415 | Pfam | C2 domain of PTEN tumour-suppressor protein | 317 | 392 | IPR014020 | - | |
| Lsi03g01516 | 415 | CDD | PTP_PTEN | 51 | 205 | IPR045101 | GO:0016791 | |
| Lsi03g01516 | 415 | Pfam | Tyrosine phosphatase family | 146 | 186 | IPR026893 | GO:0004721 | |
| Lsi03g01516 | 415 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 407 | - | - | |
| Lsi03g01516 | 415 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 41 | 210 | IPR029023 | - | |
| Lsi03g01516 | 415 | SMART | PTEN_C2_2 | 223 | 394 | IPR014020 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00954 | Lsi-Chr1:7754241 | Lsi03g01516 | Lsi-Chr3:26173837 | 7.16E-28 | dispersed | |
| Lsi03g01516 | Lsi-Chr3:26173837 | Lsi03g00522 | Lsi-Chr3:6061136 | 2.18E-42 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g01516 | K01110 | - | csv:101212127 | 799.66 |