Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01518 ATGGCGACCTCAAAACCCCAAAGGTCACCTGAGGAGGTCGAAGACATTATCCTTCGCAAAGTCTTCCTCGTCTCTCTCACCGATTCTTCCGATTCCGATTCCAGAATCGTCTATCTTGAACAAACCGCCGCCGAACTCCTTAGCGAGAGCAAACAATTGAGGATTTCAAGAGATGTAATGGAGCGCATCATAATCGATCGCCTTTCCGGCAATTTCCCCTCTGCCGAACCCCCTTTTCAGTACCTAATCGGCTGCTACCGTCGAGCTCATGACGAGACTAAGAAAATCGCTTCCATGAAGGATAAGACTTTGCGCTCTAATATTGAAATTGCCCTCAAGCAAGCAAAGAAGTTGACGATTTCGTATTGTAGGATTCATTTGGGGAATCCTGAATTGTTTTCAGGTGCCGATTTGGGTACTAACTCCAACACTTCGCCTTTGCTTCCTTTGATTTTCTCTGAGGTTGGCAGCTCCGTCGATGGATTTGGGGCTAGTTCCAGTGTTGGTGGAGCTTTTCAGTGCCCTCCGGGTTTTCTGGAGGAGTTTCTCCGTGACTCGGATTTTGATACATTAGACCCCATCTTGAAGGGGTTGTATGAGGATTTAAGGGGTAGTGTCCTTAAAGTTTCTGCTCTTGGGAACTTCCAGCAGCCCTTAAGAGCACTTAGGTTTCTGGTCAGTTTTCCTGTTGGTGCTAAATCTCTTGTGAATCACCCTTGGTGGATTCCTACTGGTAAATATTCCAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAACCTGACGTTGGGCAGCAGTGCTTTTCAGAAGCATCAACTCGTAGACCATCTGATTTACTATCTTCATTCACTACAATTAAGACAGTCATGAATAACTTATATGATGGCCTTGCGGAAGTACTTCTCTCCCTTCTTAAAAACACAGAGACCCGTGAAAATGTTCTTGAGTATCTTGCAGAGGTGATAAATAGAAACTCATCAAGGGCTCATATACAGGTTGATCCTCTCTCCTGTGCAAGTTCAGGCATGTTTGTTAATCTCAGTTCGATCATGCTACGTCTCTGTGAGCCATTTCTAGATGCAAACTTGACCAAAAGGGATAAAATTGATCCGAAATATGTATGTTATAGTAACCGCTTGGAGTTAAGTACAACTTTTCTTAAATGTGGTTATGTAACTGTCAGAGGATTAACTGCTCTACATGCTTCATCGGAAGAAGTTGCTGAGTGGATTAATAATGGTACTCAGTTGAGAACTGATAATTCTGGGCAGTTCAGCGACAGTGAAAGTCGCTTGCTACAATCCCAAGAAGCTTCCAGTTCTGGCAGTAATGCTACTATTGGATCTTCTACTGCAAAAGCAAGATCGAGTAGTGATAAAACTAGGTACCCTTTCATATGTGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGTCCACGCTCAAAGCCATGCAAGGACAAGGGCCCGCCCCACAGCTTGAAATGGATATAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATACTGAGGGATGGGTCACTAATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTCGTCTGGTTGGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTTCATCAACATGCCCAATGGAATTTGCATCCATGCCAGAACATTTTGTGGAGGATGCAATGGAATTGCTTATATTTGCTTCTCGGATCCCAAAAGCTTTGGATGGTATCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCAAGTCCGGAATATATCAGAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTCTTAACTGCTGGATTCCTCGTAGAGGTGGTTCATCTGTTACAGCAACATTATTTGAAGGCCACCAACTATCACTTGAGTATCTTGTTAGGAATCTTTTAAAGCTCTACGTAGACATTGAGTTCACTGGTTCACATACACAGTTTTATGACAAGTTCAACATCCGTCATAATATTGCCGAACTTCTTGAATACCTTTGGCAGGTTCCTAGTCATCGCAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTTCTTGATGAAAGTCTTAATAAGATTCTCGAACTTAAAGAGCTTGAAGCCGAAATGTCAAATACCGCAGAATGGGAACGACGACCTGCTCAAGAGAGGCAGGAGAGAACTCGGCTATTTCACTCCCAAGAAAATATCATCCGAATTGATATGAAATTAGCAAATGAGGACGTGAGTATGCTGGCATTTACTTCAGAGCAAATCACGGTTCCTTTCTTACTTCCAGAGATGGTACTCTCCCACTGTTACCCACAGAGCATACTTTCTATGTATATTCACTACATTTTTCTCTTTAATTTATCACATTTGGTAATTATGCCTTCCAATATTTCCTTACAGGTCGAAAGGGTGGCCAGCATGCTTAATTATTTTCTCCTGCAACTTGTTGGTCCTCAGCGAAGATCTCTTAGTCTGAAAGACCCTGAAAAGTATGAATTCCGTCCAAAAGAGTTGCTTAAGCAGGCGATTCCGAGAATATTTTCCCAGCTGCCATTTCAAAGGATGGCCGATCGTACAACGAGCAGAAATGTATATTATCATTGTGCATCTTCTCTGCCTGAATTTTGGAGCTTTTTCCAGTTGTTTAATGCTGCAGCAGTTGTACTTAGACGAATTGGAGAAGATGGTAGGATAATACAGGAGTTTATTGATCTTGGTAACAAAGCCAAGGATGCAGCTTCTGAGGCCATGGATGCTGAAGCTACTCTAGGAGATATACCGGACGAATTCCTTGACCCAATCCAATACACTTTAATGAAGGACCCTGTGATCTTACCTTCTTCAAGGATCACAGTCGATAGACCCGTCATTCAAAGACATCTCCTCAGCGATAGCACCGACCCGTTCAACCGGTCTCATCTGACTTCCGACATGCTGATACCGAACGATGAATTGAAAACAAGAATCGAAGAATTCGTCAGGTCACAAGAACTGAAGAAGCAAATGGACGGAGGAGGAGTTGCAATGCAGAGCAGCAAGGCAACCATCCAACCCACAAGCGGAGAAATGTTGATTGATTGA 3294 42.53 MATSKPQRSPEEVEDIILRKVFLVSLTDSSDSDSRIVYLEQTAAELLSESKQLRISRDVMERIIIDRLSGNFPSAEPPFQYLIGCYRRAHDETKKIASMKDKTLRSNIEIALKQAKKLTISYCRIHLGNPELFSGADLGTNSNTSPLLPLIFSEVGSSVDGFGASSSVGGAFQCPPGFLEEFLRDSDFDTLDPILKGLYEDLRGSVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPSDLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSSIMLRLCEPFLDANLTKRDKIDPKYVCYSNRLELSTTFLKCGYVTVRGLTALHASSEEVAEWINNGTQLRTDNSGQFSDSESRLLQSQEASSSGSNATIGSSTAKARSSSDKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEMDIARLEKEIELYSQEKLCYEAQILRDGSLIQQALTFYRLMVVWLVGLVGGFKMPLSSTCPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRGGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVLSHCYPQSILSMYIHYIFLFNLSHLVIMPSNISLQVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKELLKQAIPRIFSQLPFQRMADRTTSRNVYYHCASSLPEFWSFFQLFNAAAVVLRRIGEDGRIIQEFIDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNDELKTRIEEFVRSQELKKQMDGGGVAMQSSKATIQPTSGEMLID 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26192363 26199621 - Lsi03G015180.1 Lsi03g01518 659268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01518 1097 Coils Coil 531 558 - -
Lsi03g01518 1097 SUPERFAMILY RING/U-box 989 1067 - -
Lsi03g01518 1097 Pfam U-box domain 997 1067 IPR003613 GO:0004842|GO:0016567
Lsi03g01518 1097 PANTHER UBIQUITINATION FACTOR E4 1 836 IPR045132 GO:0000151|GO:0030433|GO:0034450
Lsi03g01518 1097 PANTHER UBIQUITINATION FACTOR E4 860 1074 IPR045132 GO:0000151|GO:0030433|GO:0034450
Lsi03g01518 1097 PANTHER - 1 836 - -
Lsi03g01518 1097 CDD RING-Ubox_UBE4A 999 1067 - -
Lsi03g01518 1097 ProSiteProfiles U-box domain profile. 996 1070 IPR003613 GO:0004842|GO:0016567
Lsi03g01518 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 996 1075 IPR013083 -
Lsi03g01518 1097 Pfam Ubiquitin elongating factor core 259 979 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Lsi03g01518 1097 MobiDBLite consensus disorder prediction 1074 1097 - -
Lsi03g01518 1097 MobiDBLite consensus disorder prediction 436 470 - -
Lsi03g01518 1097 SMART Ubox_2 1000 1063 IPR003613 GO:0004842|GO:0016567
Lsi03g01518 1097 PANTHER - 860 1074 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01518 K10597 - csv:101211398 1832.77