Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01524 ATGGAGATTCTAAGAAGAAGGGTCGACGCCGGTGGGCTTCTGGTGGCGGTAGCGGTGGTCGTACTGCTGGCGTCGGTGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAACATGGGTTGGACTACTAATGTGAACTACACAATCTGGGCTCAGGGAAAGCACTTCTATTATGATGACTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTAAACAAGACAGACTATGAGAATTGCAATTCTGATCATCCACTCCACAATTTCACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTGACCAGGCCTTATTACTTCATAAGTGGCAAGGGCTTTTGCTATGGAGGCATGAAGCTTGCTATCCATGTCGAACACCTACCTCCCCCGCCCTCATCCTCGCCCTTGAACGAAAAGAGCAGTGCTCCCAAATCTACCTACATTGACCACACCCCATTTGTTTTAACCGCTGTTTTTGCCATCGCTGCTCTATACGAAGCTTTCGCCCAGGTCTGGTAG 537 49.53 MEILRRRVDAGGLLVAVAVVVLLASVPEVSATRWTVGGNMGWTTNVNYTIWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYENCNSDHPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVEHLPPPPSSSPLNEKSSAPKSTYIDHTPFVLTAVFAIAALYEAFAQVW 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26250248 26252634 + Lsi03G015240.1 Lsi03g01524 659274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01524 178 Pfam Plastocyanin-like domain 42 124 IPR003245 GO:0009055
Lsi03g01524 178 Gene3D - 30 133 IPR008972 -
Lsi03g01524 178 ProSiteProfiles Phytocyanin domain profile. 32 132 IPR003245 GO:0009055
Lsi03g01524 178 PANTHER BLUE COPPER PROTEIN 13 170 IPR039391 GO:0009055
Lsi03g01524 178 SUPERFAMILY Cupredoxins 31 130 IPR008972 -
Lsi03g01524 178 PANTHER LAMIN-LIKE PROTEIN 13 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01256 Lsi-Chr3:23173609 Lsi03g01524 Lsi-Chr3:26250248 1.45E-26 dispersed
Lsi03g01524 Lsi-Chr3:26250248 Lsi06g00445 Lsi-Chr6:4871787 2.40E-31 dispersed
Lsi03g01524 Lsi-Chr3:26250248 Lsi03g01525 Lsi-Chr3:26258571 1.61E-12 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01524 - - csv:101210415 298.901